Variant report

Variant	rs2679723
Chromosome Location	chr2:86135606-86135607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86111166..86115659-chr2:86134509..86137457,4	MCF-7	breast:
2	chr2:86125364..86127332-chr2:86135410..86138199,2	MCF-7	breast:
3	chr2:85764504..85766948-chr2:86135155..86137337,2	K562	blood:
4	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000168906	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1000374	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10166563	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10194524	0.93[EUR][1000 genomes]
rs11673740	0.87[CEU][hapmap]
rs11674097	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11674537	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11674561	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11677643	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11679628	0.88[TSI][hapmap]
rs11681915	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11683466	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11684014	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs11688602	0.87[CEU][hapmap]
rs11689889	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11690193	0.87[CEU][hapmap]
rs11694341	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11899219	0.87[CEU][hapmap]
rs12714155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469983	0.85[EUR][1000 genomes]
rs17026728	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs1808822	0.89[EUR][1000 genomes]
rs1814422	0.85[EUR][1000 genomes]
rs2083169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280313	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2366951	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2366954	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2366960	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2438307	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs2577783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679724	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2886821	0.85[EUR][1000 genomes]
rs3770092	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770093	0.87[CEU][hapmap]
rs4240203	0.89[EUR][1000 genomes]
rs4832224	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4832225	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4832229	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58315750	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59317756	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59500769	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59757945	0.91[ASN][1000 genomes]
rs60313984	0.94[ASN][1000 genomes]
rs61028280	0.82[ASN][1000 genomes]
rs6547645	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547648	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6748083	0.93[EUR][1000 genomes]
rs893443	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs893444	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
3	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
4	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
8	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:86133200-86137600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:86133200-86137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:86133200-86137800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:86133200-86137800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:86133200-86139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:86133800-86136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:86133800-86139000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:86134000-86135800	Enhancers	K562	blood
20	chr2:86134000-86136800	Enhancers	HMEC	breast
21	chr2:86134000-86136800	Enhancers	NHEK	skin
22	chr2:86134200-86136000	Enhancers	A549	lung
23	chr2:86134400-86136400	Weak transcription	Brain Anterior Caudate	brain
24	chr2:86134400-86136600	Enhancers	HepG2	liver
25	chr2:86134400-86137200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
27	chr2:86134600-86137800	Weak transcription	Brain Substantia Nigra	brain
28	chr2:86134800-86135800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr2:86135000-86135800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:86135200-86135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:86135200-86137400	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:86135200-86138000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:86135200-86138200	Weak transcription	Right Atrium	heart
34	chr2:86135200-86139600	Weak transcription	Stomach Mucosa	stomach
35	chr2:86135400-86136200	Weak transcription	Brain Hippocampus Middle	brain
36	chr2:86135400-86136600	Weak transcription	Brain Angular Gyrus	brain
37	chr2:86135400-86137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:86135400-86137400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:86135400-86137400	Weak transcription	Adipose Nuclei	Adipose
40	chr2:86135400-86137400	Weak transcription	Ovary	ovary
41	chr2:86135400-86138200	Weak transcription	Placenta	Placenta
42	chr2:86135400-86138400	Weak transcription	Osteobl	bone
43	chr2:86135400-86138800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
45	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
46	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:86135400-86151600	Weak transcription	Lung	lung
48	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
49	chr2:86135600-86135800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr2:86135600-86137800	Weak transcription	HSMM	muscle

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