Variant report

Variant	rs1808822
Chromosome Location	chr2:86153455-86153456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86151028..86153839-chr2:86202583..86205571,2	K562	blood:
2	chr2:86149476..86151149-chr2:86152541..86154219,2	MCF-7	breast:
3	chr2:86146663..86150858-chr2:86151745..86155490,4	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes]
rs10166563	0.88[EUR][1000 genomes]
rs10194524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11673740	1.00[AFR][1000 genomes]
rs11674097	1.00[AFR][1000 genomes]
rs11674128	1.00[AFR][1000 genomes]
rs11674537	1.00[AFR][1000 genomes]
rs11674561	1.00[AFR][1000 genomes]
rs11675032	1.00[AFR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes]
rs11679818	1.00[AFR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes]
rs11682180	1.00[AFR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes]
rs11689889	1.00[AFR][1000 genomes]
rs11690193	1.00[AFR][1000 genomes]
rs11690888	1.00[AFR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes]
rs12714155	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1469983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2218037	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2280313	1.00[AFR][1000 genomes]
rs2366951	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2366960	0.90[EUR][1000 genomes]
rs2577783	0.89[EUR][1000 genomes]
rs2679723	0.89[EUR][1000 genomes]
rs2679724	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes]
rs4240203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4832225	0.94[EUR][1000 genomes]
rs4832229	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57187218	1.00[AFR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes]
rs58383548	1.00[AFR][1000 genomes]
rs58829348	1.00[AFR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes]
rs59500769	1.00[AFR][1000 genomes]
rs6547645	0.94[EUR][1000 genomes]
rs6547648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6748083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs893443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs893444	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
3	chr2:86147200-86155000	Enhancers	Brain Hippocampus Middle	brain
4	chr2:86148600-86156200	Weak transcription	NH-A	brain
5	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
6	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:86150400-86155000	Enhancers	Brain Substantia Nigra	brain
9	chr2:86150400-86155200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:86150400-86155200	Enhancers	A549	lung
11	chr2:86150800-86155000	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:86151000-86154800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:86151000-86155000	Enhancers	Brain Angular Gyrus	brain
14	chr2:86151600-86155000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:86151600-86155200	Enhancers	Brain Anterior Caudate	brain
16	chr2:86151600-86156400	Enhancers	Placenta	Placenta
17	chr2:86151800-86154000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:86151800-86155200	Enhancers	Spleen	Spleen
19	chr2:86152000-86154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:86152200-86153800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:86152200-86153800	Enhancers	Right Ventricle	heart
22	chr2:86152200-86154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:86152200-86154800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:86152400-86153600	Weak transcription	NHEK	skin
26	chr2:86152400-86153800	Weak transcription	K562	blood
27	chr2:86152400-86154000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:86152400-86154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:86152400-86155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:86152400-86156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr2:86152600-86153600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:86152600-86154000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:86152600-86154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:86152600-86154200	Weak transcription	HSMM	muscle
36	chr2:86152600-86154400	Weak transcription	Gastric	stomach
37	chr2:86152800-86153600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:86152800-86153800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:86152800-86153800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:86152800-86153800	Weak transcription	Hela-S3	cervix
41	chr2:86152800-86153800	Weak transcription	HMEC	breast
42	chr2:86152800-86154200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:86152800-86161000	Weak transcription	Liver	Liver
44	chr2:86152800-86162400	Weak transcription	Right Atrium	heart
45	chr2:86153000-86156200	Weak transcription	Ovary	ovary
46	chr2:86153000-86157200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:86153200-86153600	Weak transcription	Stomach Mucosa	stomach
48	chr2:86153200-86154200	Weak transcription	Fetal Thymus	thymus
49	chr2:86153200-86154600	Weak transcription	Left Ventricle	heart
50	chr2:86153200-86154600	Weak transcription	Lung	lung

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