Variant report

Variant	rs6547645
Chromosome Location	chr2:86146029-86146030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10166563	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10194524	0.98[EUR][1000 genomes]
rs11673740	0.85[CEU][hapmap]
rs11674097	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11674537	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11674561	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11677643	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11681915	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11683466	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11684014	0.82[CEU][hapmap]
rs11688602	0.85[CEU][hapmap]
rs11689889	1.00[CEU][hapmap];0.80[ASN][1000 genomes]
rs11690193	0.85[CEU][hapmap]
rs11694341	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11899219	0.85[CEU][hapmap]
rs12714155	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469983	0.90[EUR][1000 genomes]
rs17026728	1.00[CEU][hapmap]
rs1808822	0.94[EUR][1000 genomes]
rs1814422	0.81[EUR][1000 genomes]
rs2083169	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218037	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280313	0.80[ASN][1000 genomes]
rs2366951	0.93[EUR][1000 genomes]
rs2366954	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2366960	0.96[EUR][1000 genomes]
rs2438307	1.00[CEU][hapmap]
rs2577783	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679723	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679724	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2886821	0.90[EUR][1000 genomes]
rs3770092	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3770093	1.00[CEU][hapmap]
rs4240203	0.94[EUR][1000 genomes]
rs4832224	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4832225	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4832229	0.92[EUR][1000 genomes]
rs58315750	0.80[ASN][1000 genomes]
rs59317756	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59500769	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59757945	0.80[ASN][1000 genomes]
rs60313984	0.83[ASN][1000 genomes]
rs6547648	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6748083	0.98[EUR][1000 genomes]
rs893443	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs893444	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
4	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
5	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:86135400-86151600	Weak transcription	Lung	lung
7	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
8	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
10	chr2:86140000-86148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:86142000-86147200	Weak transcription	Adipose Nuclei	Adipose
12	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
13	chr2:86142400-86148000	Weak transcription	K562	blood
14	chr2:86142400-86151800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
16	chr2:86142600-86147400	Weak transcription	Liver	Liver
17	chr2:86142600-86151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:86142600-86151600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:86143200-86146800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:86143200-86148200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:86143200-86148200	Weak transcription	Brain Angular Gyrus	brain
22	chr2:86143200-86148400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:86143200-86150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:86143400-86147800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:86143400-86148000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:86143400-86148200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:86143400-86148200	Weak transcription	Ovary	ovary
28	chr2:86143400-86148400	Weak transcription	Colon Smooth Muscle	Colon
29	chr2:86143600-86147800	Weak transcription	Brain Anterior Caudate	brain
30	chr2:86143600-86148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:86143600-86148000	Weak transcription	Brain Substantia Nigra	brain
32	chr2:86145200-86148200	Weak transcription	Stomach Mucosa	stomach
33	chr2:86145600-86147800	Weak transcription	A549	lung
34	chr2:86145600-86151000	Weak transcription	HMEC	breast
35	chr2:86145800-86146400	Strong transcription	Brain Hippocampus Middle	brain
36	chr2:86145800-86148200	Weak transcription	NHDF-Ad	bronchial
37	chr2:86146000-86148000	Weak transcription	Hela-S3	cervix

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