Variant report

Variant	rs10166563
Chromosome Location	chr2:86163082-86163083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86161457..86163174-chr2:86200236..86202844,2	K562	blood:
2	chr2:86160879..86165285-chr2:86176010..86181999,6	MCF-7	breast:
3	chr2:86157505..86159597-chr2:86160754..86163331,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10194524	0.92[EUR][1000 genomes]
rs11674097	0.82[ASN][1000 genomes]
rs11674537	0.85[ASN][1000 genomes]
rs11674561	0.85[ASN][1000 genomes]
rs11677643	0.85[ASN][1000 genomes]
rs11681915	0.82[ASN][1000 genomes]
rs11683466	0.85[ASN][1000 genomes]
rs11689889	0.82[ASN][1000 genomes]
rs11694341	0.82[ASN][1000 genomes]
rs12714155	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1469983	0.96[EUR][1000 genomes]
rs1808822	0.88[EUR][1000 genomes]
rs2083169	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2218037	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280313	0.82[ASN][1000 genomes]
rs2366951	0.87[EUR][1000 genomes]
rs2366954	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366960	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2577783	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2679723	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2679724	0.87[EUR][1000 genomes]
rs2886821	0.96[EUR][1000 genomes]
rs3770092	0.82[ASN][1000 genomes]
rs4240203	0.92[EUR][1000 genomes]
rs4832224	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832229	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58315750	0.82[ASN][1000 genomes]
rs59317756	0.84[ASN][1000 genomes]
rs59500769	0.82[ASN][1000 genomes]
rs59757945	0.82[ASN][1000 genomes]
rs60313984	0.85[ASN][1000 genomes]
rs61028280	0.91[ASN][1000 genomes]
rs6547645	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547648	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748083	0.92[EUR][1000 genomes]
rs893443	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs893444	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:86156400-86163600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:86156600-86163200	Enhancers	Hela-S3	cervix
4	chr2:86157800-86163200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:86160400-86163800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:86160400-86163800	Enhancers	Osteobl	bone
7	chr2:86160400-86164800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:86160600-86164600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:86160800-86163400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:86160800-86163800	Enhancers	HUVEC	blood vessel
11	chr2:86160800-86164000	Enhancers	NH-A	brain
12	chr2:86160800-86166800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:86161000-86163600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:86161000-86164000	Enhancers	NHEK	skin
15	chr2:86161000-86164200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:86161200-86163600	Weak transcription	Right Ventricle	heart
17	chr2:86161400-86163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:86161400-86163600	Weak transcription	Placenta	Placenta
19	chr2:86161400-86164600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:86161400-86166200	Weak transcription	Ovary	ovary
21	chr2:86161800-86163200	Weak transcription	NHLF	lung
22	chr2:86161800-86163800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:86162400-86163400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:86162400-86163600	Enhancers	K562	blood
25	chr2:86162400-86163800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:86162400-86163800	Enhancers	HSMM	muscle
27	chr2:86162400-86164000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:86162400-86164000	Enhancers	Right Atrium	heart
29	chr2:86162400-86164200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr2:86162400-86164200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:86162400-86164200	Enhancers	HMEC	breast
32	chr2:86162400-86164800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:86162600-86163200	Enhancers	Brain Angular Gyrus	brain
34	chr2:86162600-86163400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:86162600-86163400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr2:86162600-86163400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr2:86162600-86163400	Flanking Active TSS	A549	lung
38	chr2:86162600-86163400	Enhancers	NHDF-Ad	bronchial
39	chr2:86162600-86163600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:86162600-86163600	Enhancers	HSMMtube	muscle
41	chr2:86162600-86163800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:86162600-86164000	Enhancers	Brain Cingulate Gyrus	brain
43	chr2:86162600-86164200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr2:86162600-86164200	Enhancers	Brain Hippocampus Middle	brain
45	chr2:86162600-86164800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr2:86162800-86163200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr2:86162800-86163200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr2:86162800-86163200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr2:86162800-86163600	Enhancers	Liver	Liver
50	chr2:86162800-86163800	Enhancers	HUES48 Cell Line	embryonic stem cell

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