Variant report

Variant	rs11674561
Chromosome Location	chr2:86117496-86117497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr2:86112960-86118329	A549	lung:	n/a	chr2:86116152-86116161 chr2:86115924-86115934
2	TCF12	chr2:86115901-86118059	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86116160-86118475	NONHSAT072061

Variant related genes	Relation type
ST3GAL5	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10166563	0.85[ASN][1000 genomes]
rs10194524	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11673740	1.00[AFR][1000 genomes]
rs11674097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11674128	1.00[AFR][1000 genomes]
rs11674537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675032	1.00[AFR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	1.00[AFR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11682180	1.00[AFR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11690193	1.00[AFR][1000 genomes]
rs11690888	1.00[AFR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12714155	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2218037	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2366951	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2577783	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2679723	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2679724	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240203	1.00[AFR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832225	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57187218	1.00[AFR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58383548	1.00[AFR][1000 genomes]
rs58829348	1.00[AFR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59500769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59757945	0.97[ASN][1000 genomes]
rs60313984	1.00[ASN][1000 genomes]
rs6547645	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6547648	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6748083	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs893443	1.00[AFR][1000 genomes]
rs893444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86114000-86117800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:86114200-86117800	Active TSS	Brain Angular Gyrus	brain
3	chr2:86114200-86117800	Active TSS	Right Atrium	heart
4	chr2:86114800-86117600	Active TSS	Brain Substantia Nigra	brain
5	chr2:86114800-86117800	Active TSS	Brain Cingulate Gyrus	brain
6	chr2:86114800-86117800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr2:86115000-86117600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr2:86115400-86118000	Active TSS	Rectal Smooth Muscle	rectum
9	chr2:86115600-86117800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:86115600-86118000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:86116400-86117600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr2:86116400-86117600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:86116400-86117600	Flanking Active TSS	Placenta	Placenta
14	chr2:86116400-86118000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:86116400-86118000	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr2:86116600-86117600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:86116600-86117600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:86116600-86117600	Flanking Bivalent TSS/Enh	HepG2	liver
19	chr2:86116600-86117800	Flanking Active TSS	Fetal Thymus	thymus
20	chr2:86116600-86118000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
21	chr2:86116600-86118000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:86116600-86118000	Flanking Active TSS	Dnd41	blood
23	chr2:86116600-86118400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr2:86116800-86117600	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr2:86116800-86118000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:86116800-86118400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:86116800-86120800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:86117000-86117600	Enhancers	Primary hematopoietic stem cells	blood
29	chr2:86117000-86117600	Flanking Active TSS	Liver	Liver
30	chr2:86117000-86117600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr2:86117000-86118000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:86117000-86118000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:86117000-86118000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr2:86117000-86118000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr2:86117000-86118200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:86117000-86118200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:86117000-86118200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:86117000-86118200	Enhancers	Spleen	Spleen
39	chr2:86117000-86118400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr2:86117000-86118400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr2:86117000-86118400	Flanking Active TSS	A549	lung
42	chr2:86117000-86118400	Enhancers	K562	blood
43	chr2:86117200-86117600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:86117200-86117800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
45	chr2:86117200-86117800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr2:86117200-86117800	Enhancers	Fetal Kidney	kidney
47	chr2:86117200-86117800	Enhancers	Stomach Mucosa	stomach
48	chr2:86117200-86118000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
49	chr2:86117200-86118000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:86117200-86118000	Enhancers	Esophagus	oesophagus

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