Variant report

Variant	rs57648087
Chromosome Location	chr2:86033036-86033037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85954466..85957805-chr2:86032452..86035127,3	MCF-7	breast:
2	chr2:86025368..86028290-chr2:86031457..86033472,3	MCF-7	breast:
3	chr2:86019488..86022075-chr2:86030495..86033177,2	K562	blood:

Variant related genes	Relation type
ENSG00000199687	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10194524	1.00[AFR][1000 genomes]
rs11673740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673983	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11674097	1.00[AFR][1000 genomes]
rs11674128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674537	1.00[AFR][1000 genomes]
rs11674561	1.00[AFR][1000 genomes]
rs11675032	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11676743	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11677643	1.00[AFR][1000 genomes]
rs11679628	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11679814	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11679818	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11680472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes]
rs11682180	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11682653	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes]
rs11684014	0.92[EUR][1000 genomes]
rs11688602	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11689889	1.00[AFR][1000 genomes]
rs11690193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690888	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11692513	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11694341	1.00[AFR][1000 genomes]
rs11895873	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11899219	0.92[EUR][1000 genomes]
rs12714155	1.00[AFR][1000 genomes]
rs13391970	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13399063	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes]
rs2218037	1.00[AFR][1000 genomes]
rs2280313	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2366951	1.00[AFR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes]
rs2679724	1.00[AFR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4240203	1.00[AFR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes]
rs57085204	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57187218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57482155	0.95[ASN][1000 genomes]
rs58281387	0.94[EUR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs58383548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58666667	0.95[ASN][1000 genomes]
rs58829348	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59317756	1.00[AFR][1000 genomes]
rs59500769	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59728891	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59797249	0.97[ASN][1000 genomes]
rs6547648	1.00[AFR][1000 genomes]
rs6748083	1.00[AFR][1000 genomes]
rs7563145	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7590113	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs893443	1.00[AFR][1000 genomes]
rs893444	1.00[AFR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
8	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
9	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
11	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
14	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
15	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:86031400-86033200	Enhancers	A549	lung
17	chr2:86031600-86033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:86032000-86033200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:86032000-86035400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:86032200-86037400	Weak transcription	Fetal Heart	heart
21	chr2:86032200-86037600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:86032600-86037800	Weak transcription	HSMM	muscle
23	chr2:86032800-86033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:86032800-86038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:86033000-86033400	Flanking Active TSS	Liver	Liver
26	chr2:86033000-86033800	Enhancers	Stomach Mucosa	stomach
27	chr2:86033000-86034000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr2:86033000-86034400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr2:86033000-86035000	Enhancers	HepG2	liver

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