Variant report

Variant	rs11895873
Chromosome Location	chr2:86042515-86042516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11673740	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11673983	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674128	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675032	0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11676743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679814	0.94[ASW][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680472	0.80[EUR][1000 genomes]
rs11681094	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11681915	0.88[TSI][hapmap]
rs11682180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682653	0.95[EUR][1000 genomes]
rs11683378	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11684014	0.88[CEU][hapmap];0.84[CHD][hapmap]
rs11688602	0.88[CEU][hapmap];0.88[ASN][1000 genomes]
rs11690193	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690888	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11691942	1.00[CEU][hapmap]
rs11692513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899219	0.88[CEU][hapmap]
rs13391970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679723	0.88[TSI][hapmap]
rs2679724	0.88[TSI][hapmap]
rs57085204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57482155	0.99[ASN][1000 genomes]
rs57648087	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58383548	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58666667	0.96[ASN][1000 genomes]
rs58829348	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59797249	0.99[ASN][1000 genomes]
rs7563145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893443	0.88[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11895873	LOC90784	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
2	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
3	chr2:86037600-86042600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
5	chr2:86040800-86042600	Enhancers	A549	lung
6	chr2:86041000-86042600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr2:86041000-86042600	Enhancers	Pancreas	Pancrea
8	chr2:86041400-86045200	Weak transcription	Ovary	ovary
9	chr2:86041400-86049600	Weak transcription	Lung	lung
10	chr2:86042000-86043400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:86042200-86042600	Enhancers	Brain Anterior Caudate	brain
12	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:86042400-86042600	Enhancers	Left Ventricle	heart

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