Variant report

Variant	rs11691942
Chromosome Location	chr2:86056733-86056734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1000374	0.83[EUR][1000 genomes]
rs11673740	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11673983	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11674128	0.85[EUR][1000 genomes]
rs11675032	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11676743	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679628	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679814	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679818	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680472	0.83[EUR][1000 genomes]
rs11681094	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11682180	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11682653	0.94[EUR][1000 genomes]
rs11683378	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11684014	0.88[CEU][hapmap]
rs11688602	0.89[CEU][hapmap]
rs11690193	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11690888	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11692513	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11895873	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11899219	0.89[CEU][hapmap]
rs13391970	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13399063	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2280313	0.83[EUR][1000 genomes]
rs57085204	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57482155	0.81[ASN][1000 genomes]
rs57648087	0.85[EUR][1000 genomes]
rs58315750	0.83[EUR][1000 genomes]
rs58383548	0.85[EUR][1000 genomes]
rs58829348	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59797249	0.81[ASN][1000 genomes]
rs7563145	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7590113	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86054400-86057800	Enhancers	Dnd41	blood
3	chr2:86054800-86066600	Weak transcription	Ovary	ovary
4	chr2:86055000-86057000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:86055000-86065400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:86055000-86065400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:86055000-86065800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:86055000-86066000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:86055000-86066000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:86055000-86066400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:86055000-86070800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:86055000-86071200	Weak transcription	Psoas Muscle	Psoas
13	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:86055200-86056800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:86055200-86057200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:86055200-86057800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:86055200-86057800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:86055200-86058800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:86055200-86060600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:86055200-86065000	Weak transcription	Brain Angular Gyrus	brain
21	chr2:86055200-86065200	Weak transcription	Primary T cells from cord blood	blood
22	chr2:86055200-86065200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:86055200-86065200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:86055200-86065400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:86055200-86065800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr2:86055200-86065800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr2:86055200-86065800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:86055200-86066400	Weak transcription	Brain Substantia Nigra	brain
29	chr2:86055200-86066400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:86055200-86069200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:86055200-86070800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:86055200-86073200	Weak transcription	NHDF-Ad	bronchial
33	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
35	chr2:86055400-86056800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:86055400-86057000	Weak transcription	GM12878-XiMat	blood
37	chr2:86055400-86065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:86055400-86065200	Weak transcription	Fetal Muscle Leg	muscle
39	chr2:86055400-86065400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:86055400-86065400	Weak transcription	Thymus	Thymus
41	chr2:86055400-86066000	Weak transcription	Placenta	Placenta
42	chr2:86055400-86066400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:86055400-86066600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:86055400-86069400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr2:86055400-86071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:86055600-86057200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr2:86055600-86057800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr2:86055600-86060200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr2:86055600-86065000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:86055600-86065000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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