Variant report

Variant	rs11682180
Chromosome Location	chr2:86048139-86048140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86043786..86048456-chr2:86331469..86335365,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132300	Chromatin interaction
ENSG00000068654	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes]
rs10194524	1.00[AFR][1000 genomes]
rs11673740	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11673983	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11674097	1.00[AFR][1000 genomes]
rs11674128	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11674537	1.00[AFR][1000 genomes]
rs11674561	1.00[AFR][1000 genomes]
rs11675032	0.89[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676743	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11677643	1.00[AFR][1000 genomes]
rs11679628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679814	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11680472	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11681094	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11683378	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes]
rs11684014	0.88[CEU][hapmap]
rs11688602	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11689889	1.00[AFR][1000 genomes]
rs11690193	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11690888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11691942	1.00[CEU][hapmap]
rs11692513	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11694341	1.00[AFR][1000 genomes]
rs11895873	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11899219	0.89[CEU][hapmap]
rs12714155	1.00[AFR][1000 genomes]
rs13391970	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13399063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes]
rs2218037	1.00[AFR][1000 genomes]
rs2280313	1.00[AFR][1000 genomes]
rs2366951	1.00[AFR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes]
rs2679724	1.00[AFR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes]
rs4240203	1.00[AFR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes]
rs57085204	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57187218	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57482155	0.97[ASN][1000 genomes]
rs57648087	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58315750	1.00[AFR][1000 genomes]
rs58383548	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58666667	0.95[ASN][1000 genomes]
rs58829348	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59317756	1.00[AFR][1000 genomes]
rs59500769	1.00[AFR][1000 genomes]
rs59797249	0.97[ASN][1000 genomes]
rs6547648	1.00[AFR][1000 genomes]
rs6748083	1.00[AFR][1000 genomes]
rs7563145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7590113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893443	1.00[AFR][1000 genomes]
rs893444	1.00[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86041400-86049600	Weak transcription	Lung	lung
4	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86045600-86054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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