Variant report

Variant	rs6547648
Chromosome Location	chr2:86157215-86157216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes]
rs10166563	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11673740	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11674097	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11674128	1.00[AFR][1000 genomes]
rs11674537	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11674561	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11675032	1.00[AFR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11679628	0.88[TSI][hapmap]
rs11679818	1.00[AFR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes]
rs11681915	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11682180	1.00[AFR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11684014	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs11688602	0.87[CEU][hapmap]
rs11689889	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11690193	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11690888	1.00[AFR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11899219	0.87[CEU][hapmap]
rs12714155	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1469983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026728	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs1808822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2218037	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280313	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2366951	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366960	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2438307	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs2577783	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2679723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2679724	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770092	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3770093	0.87[CEU][hapmap]
rs4240203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832225	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832229	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57187218	1.00[AFR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58383548	1.00[AFR][1000 genomes]
rs58829348	1.00[AFR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59500769	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59757945	0.82[ASN][1000 genomes]
rs60313984	0.85[ASN][1000 genomes]
rs61028280	0.91[ASN][1000 genomes]
rs6547645	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6748083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs893443	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs893444	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
2	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
3	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:86152800-86161000	Weak transcription	Liver	Liver
7	chr2:86152800-86162400	Weak transcription	Right Atrium	heart
8	chr2:86153400-86158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:86154400-86161000	Weak transcription	Stomach Mucosa	stomach
10	chr2:86154600-86157600	Weak transcription	NHEK	skin
11	chr2:86154800-86157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:86154800-86157600	Weak transcription	HMEC	breast
13	chr2:86154800-86157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:86154800-86160400	Weak transcription	Osteobl	bone
15	chr2:86154800-86162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:86155000-86162600	Weak transcription	Brain Angular Gyrus	brain
17	chr2:86155000-86162600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:86155200-86157400	Weak transcription	Brain Anterior Caudate	brain
19	chr2:86155200-86157600	Weak transcription	Spleen	Spleen
20	chr2:86155200-86162600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:86155400-86159200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:86155800-86157800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:86156000-86159200	Weak transcription	Primary T cells from cord blood	blood
24	chr2:86156000-86159200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr2:86156200-86157800	Enhancers	Ovary	ovary
26	chr2:86156200-86158200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:86156200-86159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:86156400-86158800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:86156400-86163600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:86156600-86159600	Weak transcription	Fetal Thymus	thymus
31	chr2:86156600-86160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:86156600-86160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:86156600-86163200	Enhancers	Hela-S3	cervix
34	chr2:86156800-86157800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr2:86156800-86157800	Enhancers	K562	blood
36	chr2:86156800-86158200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:86156800-86158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:86156800-86159600	Enhancers	A549	lung
39	chr2:86157000-86157400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:86157000-86158000	Enhancers	Brain Hippocampus Middle	brain
41	chr2:86157000-86160800	Weak transcription	NH-A	brain
42	chr2:86157200-86157800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:86157200-86157800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:86157200-86157800	Enhancers	Fetal Muscle Leg	muscle
45	chr2:86157200-86158000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr2:86157200-86158000	Enhancers	Placenta	Placenta
47	chr2:86157200-86158200	Enhancers	Adipose Nuclei	Adipose

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