Variant report

Variant	rs2366960
Chromosome Location	chr2:86174213-86174214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86103419..86105731-chr2:86172011..86174482,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10166563	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10194524	0.94[EUR][1000 genomes]
rs11673740	0.87[CEU][hapmap]
rs11674097	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11679628	0.88[TSI][hapmap]
rs11681915	1.00[CEU][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs11684014	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs11688602	0.87[CEU][hapmap]
rs11689889	1.00[CEU][hapmap]
rs11690193	0.87[CEU][hapmap]
rs11899219	0.87[CEU][hapmap]
rs12714155	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1469983	0.94[EUR][1000 genomes]
rs17026728	0.87[CEU][hapmap]
rs1808822	0.90[EUR][1000 genomes]
rs2083169	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2218037	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2366951	0.90[EUR][1000 genomes]
rs2366954	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2438307	0.87[CEU][hapmap]
rs2577783	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2679723	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2679724	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2886821	0.94[EUR][1000 genomes]
rs3770092	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs3770093	0.87[CEU][hapmap]
rs4240203	0.98[EUR][1000 genomes]
rs4832224	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4832225	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4832229	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61028280	1.00[ASN][1000 genomes]
rs6547645	0.96[EUR][1000 genomes]
rs6547648	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6748083	0.94[EUR][1000 genomes]
rs893443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893444	0.83[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86172800-86176200	Weak transcription	HepG2	liver
2	chr2:86173400-86175800	Weak transcription	Liver	Liver

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