Variant report

Variant	rs893444
Chromosome Location	chr2:86132521-86132522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10166563	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10194524	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11673740	1.00[AFR][1000 genomes]
rs11674097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11674128	1.00[AFR][1000 genomes]
rs11674537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675032	1.00[AFR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	1.00[AFR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11682180	1.00[AFR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11690193	1.00[AFR][1000 genomes]
rs11690888	1.00[AFR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12714155	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2218037	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2366951	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366960	0.83[EUR][1000 genomes]
rs2577783	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2679723	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2679724	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240203	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4832225	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57187218	1.00[AFR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58383548	1.00[AFR][1000 genomes]
rs58829348	1.00[AFR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59500769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59757945	0.97[ASN][1000 genomes]
rs60313984	1.00[ASN][1000 genomes]
rs6547645	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6547648	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6748083	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs893443	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:86124400-86134000	Weak transcription	Lung	lung
5	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
6	chr2:86128800-86133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:86128800-86133800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:86129800-86133200	Enhancers	Brain Anterior Caudate	brain
9	chr2:86129800-86133400	Enhancers	Brain Substantia Nigra	brain
10	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
11	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
12	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:86130000-86134000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:86130600-86133600	Enhancers	Brain Angular Gyrus	brain
15	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:86131000-86134400	Weak transcription	Right Atrium	heart
17	chr2:86131200-86134000	Weak transcription	K562	blood
18	chr2:86131400-86132800	Bivalent Enhancer	HepG2	liver
19	chr2:86131400-86133200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
22	chr2:86131600-86133000	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:86131600-86133200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
25	chr2:86131800-86133200	Enhancers	Adipose Nuclei	Adipose
26	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr2:86132000-86132800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:86132000-86132800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:86132000-86133200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:86132000-86133200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:86132000-86133200	Enhancers	Fetal Muscle Leg	muscle
32	chr2:86132000-86133200	Enhancers	Pancreas	Pancrea
33	chr2:86132000-86133200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr2:86132000-86133200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr2:86132000-86133200	Enhancers	Stomach Smooth Muscle	stomach
36	chr2:86132000-86133400	Enhancers	Placenta	Placenta
37	chr2:86132000-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:86132200-86132800	Enhancers	Fetal Kidney	kidney
39	chr2:86132200-86132800	Enhancers	Fetal Stomach	stomach
40	chr2:86132200-86133000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:86132200-86133000	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr2:86132200-86133000	Enhancers	Fetal Lung	lung
43	chr2:86132200-86133200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:86132200-86133200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:86132200-86133200	Enhancers	Ovary	ovary
46	chr2:86132200-86133200	Enhancers	Spleen	Spleen
47	chr2:86132200-86134000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:86132400-86132600	Enhancers	Fetal Intestine Large	intestine
49	chr2:86132400-86132600	Enhancers	Right Ventricle	heart
50	chr2:86132400-86132800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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