Variant report

Variant	rs4832225
Chromosome Location	chr2:86156434-86156435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86147713..86150880-chr2:86153499..86156772,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10166563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10194524	0.98[EUR][1000 genomes]
rs11674537	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11674561	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11677643	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11683466	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11694341	0.81[EUR][1000 genomes]
rs12714155	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1469983	0.90[EUR][1000 genomes]
rs1808822	0.94[EUR][1000 genomes]
rs1814422	0.81[EUR][1000 genomes]
rs2083169	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2218037	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2366951	0.93[EUR][1000 genomes]
rs2366954	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2366960	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577783	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679723	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2679724	0.93[EUR][1000 genomes]
rs2886821	0.90[EUR][1000 genomes]
rs3770092	0.81[EUR][1000 genomes]
rs4240203	0.94[EUR][1000 genomes]
rs4832224	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4832229	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59317756	0.83[EUR][1000 genomes]
rs59500769	0.81[EUR][1000 genomes]
rs60313984	0.81[ASN][1000 genomes]
rs61028280	0.86[ASN][1000 genomes]
rs6547645	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6547648	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6748083	0.98[EUR][1000 genomes]
rs893443	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs893444	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
2	chr2:86149400-86157400	Weak transcription	Pancreas	Pancrea
3	chr2:86149800-86157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:86149800-86157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:86152800-86161000	Weak transcription	Liver	Liver
8	chr2:86152800-86162400	Weak transcription	Right Atrium	heart
9	chr2:86153000-86157200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:86153200-86157200	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:86153400-86158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:86154400-86161000	Weak transcription	Stomach Mucosa	stomach
13	chr2:86154600-86157200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:86154600-86157600	Weak transcription	NHEK	skin
15	chr2:86154800-86156800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:86154800-86156800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:86154800-86157200	Weak transcription	Adipose Nuclei	Adipose
18	chr2:86154800-86157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:86154800-86157600	Weak transcription	HMEC	breast
20	chr2:86154800-86157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:86154800-86160400	Weak transcription	Osteobl	bone
22	chr2:86154800-86162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:86155000-86157000	Weak transcription	Brain Substantia Nigra	brain
24	chr2:86155000-86162600	Weak transcription	Brain Angular Gyrus	brain
25	chr2:86155000-86162600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:86155200-86156800	Weak transcription	A549	lung
27	chr2:86155200-86156800	Weak transcription	K562	blood
28	chr2:86155200-86157400	Weak transcription	Brain Anterior Caudate	brain
29	chr2:86155200-86157600	Weak transcription	Spleen	Spleen
30	chr2:86155200-86162600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:86155400-86159200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:86155800-86156600	Enhancers	Fetal Thymus	thymus
33	chr2:86155800-86157800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:86156000-86159200	Weak transcription	Primary T cells from cord blood	blood
35	chr2:86156000-86159200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:86156200-86156600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:86156200-86156600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:86156200-86156600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr2:86156200-86156600	Weak transcription	Hela-S3	cervix
40	chr2:86156200-86157000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr2:86156200-86157000	Enhancers	NH-A	brain
42	chr2:86156200-86157800	Enhancers	Ovary	ovary
43	chr2:86156200-86158200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:86156200-86159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr2:86156400-86156600	Enhancers	Brain Hippocampus Middle	brain
46	chr2:86156400-86157200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr2:86156400-86157200	Weak transcription	Placenta	Placenta
48	chr2:86156400-86158800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:86156400-86163600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links