Variant report

Variant	rs2577783
Chromosome Location	chr2:86141103-86141104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86140957..86144673-chr2:86146213..86150354,4	K562	blood:
2	chr2:86140957..86144482-chr2:86147122..86150354,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1000374	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10166563	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10190742	0.92[AFR][1000 genomes]
rs10194524	0.93[EUR][1000 genomes]
rs11673740	0.87[CEU][hapmap]
rs11674097	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11674537	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11674561	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11677643	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11681915	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11683466	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11684014	0.87[CEU][hapmap]
rs11688602	0.87[CEU][hapmap]
rs11689889	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11690193	0.87[CEU][hapmap]
rs11694341	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11899219	0.87[CEU][hapmap]
rs12714155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398696	0.89[AFR][1000 genomes]
rs1469983	0.85[EUR][1000 genomes]
rs17026728	0.87[CEU][hapmap]
rs1808822	0.89[EUR][1000 genomes]
rs1814422	0.85[EUR][1000 genomes]
rs2083169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280313	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2366951	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2366954	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2366960	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2438307	0.87[CEU][hapmap]
rs2679723	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679724	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2886821	0.85[EUR][1000 genomes]
rs3770092	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770093	0.87[CEU][hapmap]
rs4240203	0.89[EUR][1000 genomes]
rs4832224	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4832225	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4832229	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58315750	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59317756	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59500769	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59757945	0.91[ASN][1000 genomes]
rs60313984	0.94[ASN][1000 genomes]
rs61028280	0.82[ASN][1000 genomes]
rs6547645	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547648	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6748083	0.93[EUR][1000 genomes]
rs7582358	0.92[AFR][1000 genomes]
rs893443	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs893444	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
4	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
9	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
10	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
11	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:86135400-86151600	Weak transcription	Lung	lung
13	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
14	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:86137800-86141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:86137800-86141600	Enhancers	HMEC	breast
17	chr2:86137800-86141600	Enhancers	NHDF-Ad	bronchial
18	chr2:86138000-86143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:86138200-86142000	Weak transcription	Aorta	Aorta
20	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:86138400-86141400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:86138600-86141200	Weak transcription	Liver	Liver
23	chr2:86138600-86141800	Weak transcription	Right Atrium	heart
24	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
25	chr2:86138800-86141400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:86139200-86142000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:86139400-86142200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:86139600-86141400	Enhancers	NHEK	skin
29	chr2:86139600-86141600	Weak transcription	Brain Substantia Nigra	brain
30	chr2:86139600-86142000	Weak transcription	Ovary	ovary
31	chr2:86139600-86142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:86139600-86143200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:86139800-86141200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:86139800-86141200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr2:86139800-86141200	Weak transcription	Brain Hippocampus Middle	brain
36	chr2:86139800-86141400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:86139800-86141400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:86139800-86141400	Weak transcription	Hela-S3	cervix
39	chr2:86139800-86142200	Weak transcription	Brain Angular Gyrus	brain
40	chr2:86139800-86142200	Weak transcription	Brain Anterior Caudate	brain
41	chr2:86139800-86142400	Weak transcription	Stomach Mucosa	stomach
42	chr2:86140000-86142200	Weak transcription	Placenta	Placenta
43	chr2:86140000-86148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:86140200-86142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:86140400-86141400	Weak transcription	HSMM	muscle
46	chr2:86140400-86144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr2:86140600-86141200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:86140800-86141600	Enhancers	Osteobl	bone
49	chr2:86140800-86142000	Enhancers	Adipose Nuclei	Adipose
50	chr2:86141000-86141600	Genic enhancers	A549	lung

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