Variant report

Variant	rs11688602
Chromosome Location	chr2:86031240-86031241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86029942..86032229-chr2:86033484..86035418,2	K562	blood:
2	chr17:73872682..73875528-chr2:86029193..86031656,2	MCF-7	breast:
3	chr2:86019488..86022075-chr2:86030495..86033177,2	K562	blood:

Variant related genes	Relation type
ENSG00000132481	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11673740	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11673983	0.89[CEU][hapmap];0.88[ASN][1000 genomes]
rs11674097	0.88[CEU][hapmap]
rs11674128	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11675032	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11676743	0.88[ASN][1000 genomes]
rs11679628	0.88[CEU][hapmap];0.88[ASN][1000 genomes]
rs11679814	0.88[ASN][1000 genomes]
rs11679818	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11680472	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11681094	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11681915	0.87[CEU][hapmap]
rs11682180	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11682653	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11683378	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11684014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11689889	0.85[CEU][hapmap]
rs11690193	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11690888	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11691942	0.89[CEU][hapmap]
rs11692513	0.88[ASN][1000 genomes]
rs11895873	0.88[ASN][1000 genomes]
rs11899219	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13391970	0.88[ASN][1000 genomes]
rs13399063	0.89[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs2679723	0.87[CEU][hapmap]
rs2679724	0.87[CEU][hapmap]
rs3770092	0.88[CEU][hapmap]
rs57085204	0.88[ASN][1000 genomes]
rs57187218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57482155	0.87[ASN][1000 genomes]
rs57648087	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58281387	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58383548	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58666667	0.87[ASN][1000 genomes]
rs59728891	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59797249	0.89[ASN][1000 genomes]
rs60657835	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61411240	0.86[ASN][1000 genomes]
rs7563145	0.89[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs7590113	0.89[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs893443	0.87[CEU][hapmap]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86031600	Weak transcription	HSMM	muscle
8	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
9	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
10	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:86028600-86031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
13	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:86029200-86032200	Enhancers	Hela-S3	cervix
16	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
17	chr2:86030000-86033000	Weak transcription	HepG2	liver
18	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
19	chr2:86030200-86031600	Weak transcription	Psoas Muscle	Psoas
20	chr2:86030600-86031400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:86030800-86031800	Enhancers	Thymus	Thymus
23	chr2:86030800-86032200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:86031000-86031600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:86031000-86031800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr2:86031000-86032000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr2:86031000-86032000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr2:86031000-86032000	Enhancers	Fetal Thymus	thymus
29	chr2:86031000-86032200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr2:86031000-86032200	Enhancers	Dnd41	blood
31	chr2:86031200-86031400	Enhancers	Fetal Heart	heart
32	chr2:86031200-86031600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:86031200-86032000	Enhancers	Primary T cells fromperipheralblood	blood
34	chr2:86031200-86032000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr2:86031200-86032000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:86031200-86032000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr2:86031200-86032000	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr2:86031200-86032200	Enhancers	Primary T cells from cord blood	blood
39	chr2:86031200-86032200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr2:86031200-86032200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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