Variant report

Variant	rs60657835
Chromosome Location	chr2:86030361-86030362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86020913..86022569-chr2:86028373..86031162,2	K562	blood:
2	chr2:86029942..86032229-chr2:86033484..86035418,2	K562	blood:
3	chr17:73872682..73875528-chr2:86029193..86031656,2	MCF-7	breast:
4	chr2:85863132..85864782-chr2:86027607..86030371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168883	Chromatin interaction
ENSG00000132481	Chromatin interaction

rs_ID	r²[population]
rs11680472	0.80[EUR][1000 genomes]
rs11684014	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11688602	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11899219	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57187218	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58281387	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59728891	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61411240	0.90[ASN][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86031600	Weak transcription	HSMM	muscle
8	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
9	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
10	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:86028200-86031000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:86028600-86031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
14	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:86029200-86030600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:86029200-86032200	Enhancers	Hela-S3	cervix
18	chr2:86029800-86030400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr2:86029800-86030600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
21	chr2:86030000-86033000	Weak transcription	HepG2	liver
22	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
23	chr2:86030200-86031600	Weak transcription	Psoas Muscle	Psoas

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