Variant report

Variant	rs58281387
Chromosome Location	chr2:86030192-86030193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85986182..85989122-chr2:86027454..86030247,2	MCF-7	breast:
2	chr2:86020913..86022569-chr2:86028373..86031162,2	K562	blood:
3	chr2:86029942..86032229-chr2:86033484..86035418,2	K562	blood:
4	chr17:73872682..73875528-chr2:86029193..86031656,2	MCF-7	breast:
5	chr2:85863132..85864782-chr2:86027607..86030371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168883	Chromatin interaction
ENSG00000168874	Chromatin interaction
ENSG00000132481	Chromatin interaction

rs_ID	r²[population]
rs11673740	0.94[EUR][1000 genomes]
rs11674128	0.94[EUR][1000 genomes]
rs11675032	0.81[EUR][1000 genomes]
rs11680472	0.96[EUR][1000 genomes]
rs11681094	0.81[EUR][1000 genomes]
rs11682653	0.81[EUR][1000 genomes]
rs11683378	0.81[EUR][1000 genomes]
rs11684014	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11688602	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11690193	0.94[EUR][1000 genomes]
rs11899219	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57187218	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57648087	0.94[EUR][1000 genomes]
rs58383548	0.94[EUR][1000 genomes]
rs59728891	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60657835	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61411240	0.97[ASN][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86030200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:86024800-86038000	Weak transcription	Ovary	ovary
8	chr2:86025400-86031600	Weak transcription	HSMM	muscle
9	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
10	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
11	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:86028200-86031000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:86028600-86031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
15	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:86029200-86030600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:86029200-86032200	Enhancers	Hela-S3	cervix
19	chr2:86029600-86030200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:86029600-86030200	Enhancers	Psoas Muscle	Psoas
21	chr2:86029800-86030400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:86029800-86030600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
24	chr2:86030000-86033000	Weak transcription	HepG2	liver
25	chr2:86030000-86037600	Weak transcription	Aorta	Aorta

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