Variant report

Variant	rs57187218
Chromosome Location	chr2:86030770-86030771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86020913..86022569-chr2:86028373..86031162,2	K562	blood:
2	chr2:86029942..86032229-chr2:86033484..86035418,2	K562	blood:
3	chr17:73872682..73875528-chr2:86029193..86031656,2	MCF-7	breast:
4	chr2:86019488..86022075-chr2:86030495..86033177,2	K562	blood:

Variant related genes	Relation type
ENSG00000132481	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes]
rs10194524	1.00[AFR][1000 genomes]
rs11673740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11674097	1.00[AFR][1000 genomes]
rs11674128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11674537	1.00[AFR][1000 genomes]
rs11674561	1.00[AFR][1000 genomes]
rs11675032	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes]
rs11679818	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11681094	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes]
rs11682180	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11683378	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes]
rs11684014	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11688602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11689889	1.00[AFR][1000 genomes]
rs11690193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11690888	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes]
rs11899219	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12714155	1.00[AFR][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes]
rs2218037	1.00[AFR][1000 genomes]
rs2280313	1.00[AFR][1000 genomes]
rs2366951	1.00[AFR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes]
rs2679724	1.00[AFR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes]
rs4240203	1.00[AFR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58281387	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58315750	1.00[AFR][1000 genomes]
rs58383548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58829348	1.00[AFR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes]
rs59500769	1.00[AFR][1000 genomes]
rs59728891	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60657835	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61411240	0.97[ASN][1000 genomes]
rs6547648	1.00[AFR][1000 genomes]
rs6748083	1.00[AFR][1000 genomes]
rs893443	1.00[AFR][1000 genomes]
rs893444	1.00[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86031600	Weak transcription	HSMM	muscle
8	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
9	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
10	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:86028200-86031000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:86028600-86031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
14	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:86029200-86032200	Enhancers	Hela-S3	cervix
17	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
18	chr2:86030000-86033000	Weak transcription	HepG2	liver
19	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
20	chr2:86030200-86031600	Weak transcription	Psoas Muscle	Psoas
21	chr2:86030400-86030800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:86030600-86031400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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