The 2.0 version of rSNPBase

Variant report

Variant rs1000374
Chromosome Location chr2:86066173-86066174
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86039800-86074800 Weak transcription Aorta Aorta
2 chr2:86054800-86066600 Weak transcription Ovary ovary
3 chr2:86055000-86066400 Weak transcription Primary monocytes fromperipheralblood blood
4 chr2:86055000-86070800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr2:86055000-86071200 Weak transcription Psoas Muscle Psoas
6 chr2:86055000-86080000 Weak transcription Duodenum Mucosa Duodenum
7 chr2:86055200-86066400 Weak transcription Brain Substantia Nigra brain
8 chr2:86055200-86066400 Weak transcription Stomach Smooth Muscle stomach
9 chr2:86055200-86069200 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr2:86055200-86070800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr2:86055200-86073200 Weak transcription NHDF-Ad bronchial
12 chr2:86055200-86078200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr2:86055200-86080400 Weak transcription Colonic Mucosa Colon
14 chr2:86055400-86066400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr2:86055400-86066600 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr2:86055400-86069400 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr2:86055400-86071200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr2:86055600-86066800 Weak transcription NHEK skin
19 chr2:86055600-86071400 Weak transcription Pancreas Pancrea
20 chr2:86057200-86071200 Weak transcription Primary hematopoietic stem cells blood
21 chr2:86057600-86068400 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr2:86057800-86068800 Weak transcription Dnd41 blood
23 chr2:86058200-86066600 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr2:86059400-86078400 Weak transcription Rectal Smooth Muscle rectum
25 chr2:86060400-86066400 Weak transcription Adipose Nuclei Adipose
26 chr2:86060600-86070400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr2:86060600-86074200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr2:86060800-86071200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr2:86061000-86070800 Weak transcription Osteobl bone
30 chr2:86062000-86074400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr2:86062200-86066600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr2:86062200-86068800 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr2:86063000-86066400 Weak transcription Primary B cells from cord blood blood
34 chr2:86063200-86070800 Weak transcription Fetal Stomach stomach
35 chr2:86063800-86080200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr2:86064200-86067400 Strong transcription A549 lung
37 chr2:86064200-86070800 Weak transcription Brain Germinal Matrix brain
38 chr2:86064200-86070800 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr2:86064800-86070800 Weak transcription NH-A brain
40 chr2:86065000-86066600 Strong transcription Brain Angular Gyrus brain
41 chr2:86065000-86066600 Weak transcription Fetal Brain Female brain
42 chr2:86065000-86066600 Weak transcription Left Ventricle heart
43 chr2:86065000-86073400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr2:86065000-86075400 Strong transcription Brain Hippocampus Middle brain
45 chr2:86065000-86075400 Strong transcription Fetal Muscle Trunk muscle
46 chr2:86065000-86075800 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr2:86065000-86078400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr2:86065200-86066400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr2:86065200-86066800 Strong transcription Primary T cells from cord blood blood
50 chr2:86065200-86067400 Strong transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015