Variant report

Variant	rs11683378
Chromosome Location	chr2:86054317-86054318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86054177..86056826-chr2:86305154..86307872,2	MCF-7	breast:
2	chr2:86054287..86055622-chr2:86306024..86306629,3	MCF-7	breast:
3	chr2:86053537..86056634-chr2:86057076..86060323,3	K562	blood:
4	chr2:86041294..86041978-chr2:86054251..86055110,2	K562	blood:
5	chr2:86054004..86055894-chr2:86304722..86306644,12	MCF-7	breast:
6	chr2:86053140..86055095-chr2:86335113..86337888,2	K562	blood:
7	chr2:86054263..86055159-chr2:86306734..86307688,8	K562	blood:
8	chr2:86054291..86055159-chr2:86262823..86263723,2	MCF-7	breast:
9	chr2:86053903..86054829-chr2:86251609..86252561,2	MCF-7	breast:
10	chr2:86054186..86055161-chr2:86306747..86308111,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000132300	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1000374	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10194524	1.00[AFR][1000 genomes]
rs11673740	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11673983	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11674097	1.00[AFR][1000 genomes]
rs11674128	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11674537	1.00[AFR][1000 genomes]
rs11674561	1.00[AFR][1000 genomes]
rs11675032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11676743	0.91[EUR][1000 genomes]
rs11677643	1.00[AFR][1000 genomes]
rs11679628	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11679814	0.91[EUR][1000 genomes]
rs11679818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11680472	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11681094	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11681915	1.00[AFR][1000 genomes]
rs11682180	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11682653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11683466	1.00[AFR][1000 genomes]
rs11684014	0.88[CEU][hapmap]
rs11688602	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11689889	1.00[AFR][1000 genomes]
rs11690193	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11690888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11691942	1.00[CEU][hapmap]
rs11692513	0.91[EUR][1000 genomes]
rs11694341	1.00[AFR][1000 genomes]
rs11895873	0.91[EUR][1000 genomes]
rs11899219	0.89[CEU][hapmap]
rs12714155	1.00[AFR][1000 genomes]
rs13391970	0.91[EUR][1000 genomes]
rs13399063	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1469983	1.00[AFR][1000 genomes]
rs1808822	1.00[AFR][1000 genomes]
rs1814422	1.00[AFR][1000 genomes]
rs2083169	1.00[AFR][1000 genomes]
rs2218037	1.00[AFR][1000 genomes]
rs2280313	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2366951	1.00[AFR][1000 genomes]
rs2366954	1.00[AFR][1000 genomes]
rs2679724	1.00[AFR][1000 genomes]
rs2886821	1.00[AFR][1000 genomes]
rs3770092	1.00[AFR][1000 genomes]
rs4240203	1.00[AFR][1000 genomes]
rs4832224	1.00[AFR][1000 genomes]
rs57085204	0.91[EUR][1000 genomes]
rs57187218	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57648087	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58281387	0.81[EUR][1000 genomes]
rs58315750	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58383548	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58829348	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59317756	1.00[AFR][1000 genomes]
rs59500769	1.00[AFR][1000 genomes]
rs59728891	0.81[EUR][1000 genomes]
rs6547648	1.00[AFR][1000 genomes]
rs6748083	1.00[AFR][1000 genomes]
rs7563145	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7590113	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs893443	1.00[AFR][1000 genomes]
rs893444	1.00[AFR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:86045600-86054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:86049800-86054800	Weak transcription	Lung	lung
6	chr2:86051400-86054400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:86051800-86054800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:86054200-86054400	Active TSS	Brain Angular Gyrus	brain
9	chr2:86054200-86054400	Enhancers	Brain Hippocampus Middle	brain
10	chr2:86054200-86054400	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr2:86054200-86054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:86054200-86054600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:86054200-86054600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:86054200-86054600	Enhancers	Brain Substantia Nigra	brain
15	chr2:86054200-86054600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:86054200-86054800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:86054200-86054800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr2:86054200-86055000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr2:86054200-86055400	Enhancers	Fetal Muscle Leg	muscle
20	chr2:86054200-86055600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:86054200-86055800	Enhancers	Fetal Thymus	thymus

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