Variant report

Variant	rs11684014
Chromosome Location	chr2:86028604-86028605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85986182..85989122-chr2:86027454..86030247,2	MCF-7	breast:
2	chr2:86020913..86022569-chr2:86028373..86031162,2	K562	blood:
3	chr2:86001369..86004244-chr2:86027552..86029124,2	MCF-7	breast:
4	chr2:85863132..85864782-chr2:86027607..86030371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168883	Chromatin interaction
ENSG00000168874	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11673740	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs11673983	0.88[CEU][hapmap]
rs11674097	0.87[CEU][hapmap]
rs11674128	0.92[EUR][1000 genomes]
rs11679628	0.88[CEU][hapmap];0.84[CHD][hapmap]
rs11680472	0.94[EUR][1000 genomes]
rs11681094	0.88[CEU][hapmap]
rs11681915	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs11682180	0.88[CEU][hapmap]
rs11683378	0.88[CEU][hapmap]
rs11688602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11689889	0.82[CEU][hapmap]
rs11690193	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs11691942	0.88[CEU][hapmap]
rs11899219	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13399063	0.88[CEU][hapmap]
rs2679723	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs2679724	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs3770092	0.87[CEU][hapmap]
rs57187218	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57648087	0.92[EUR][1000 genomes]
rs58281387	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58383548	0.92[EUR][1000 genomes]
rs59728891	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60657835	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61411240	0.95[ASN][1000 genomes]
rs7563145	0.88[CEU][hapmap]
rs7590113	0.88[CEU][hapmap]
rs893443	0.87[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979290	chr2:86015956-86029004	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86030200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:86024800-86038000	Weak transcription	Ovary	ovary
8	chr2:86025400-86031600	Weak transcription	HSMM	muscle
9	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
10	chr2:86026800-86029600	Weak transcription	Psoas Muscle	Psoas
11	chr2:86026800-86029800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:86027000-86029800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
14	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:86027600-86028800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86028000-86029000	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr2:86028000-86029200	Weak transcription	Hela-S3	cervix
18	chr2:86028200-86030000	ZNF genes & repeats	Aorta	Aorta
19	chr2:86028200-86031000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:86028400-86029000	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:86028600-86029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:86028600-86031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links