Variant report

Variant	rs7590113
Chromosome Location	chr2:86044275-86044276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86043786..86048456-chr2:86331469..86335365,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132300	Chromatin interaction
ENSG00000068654	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11673740	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11673983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674128	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675032	0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11676743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679814	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680472	0.80[EUR][1000 genomes]
rs11681094	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11682180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682653	0.95[EUR][1000 genomes]
rs11683378	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11684014	0.88[CEU][hapmap]
rs11688602	0.89[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11690193	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690888	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11691942	1.00[CEU][hapmap]
rs11692513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899219	0.89[CEU][hapmap]
rs13391970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57085204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57482155	0.99[ASN][1000 genomes]
rs57648087	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58383548	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58666667	0.96[ASN][1000 genomes]
rs58829348	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59797249	0.99[ASN][1000 genomes]
rs7563145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86041400-86045200	Weak transcription	Ovary	ovary
4	chr2:86041400-86049600	Weak transcription	Lung	lung
5	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:86042600-86047400	Weak transcription	A549	lung
7	chr2:86044200-86044400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:86044200-86044600	Enhancers	K562	blood

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