The 2.0 version of rSNPBase

Variant report

Variant rs59797249
Chromosome Location chr2:86038664-86038665
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86024600-86043600 Weak transcription Right Ventricle heart
2 chr2:86028800-86039000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:86029000-86040800 Weak transcription Brain Hippocampus Middle brain
4 chr2:86029800-86054400 Weak transcription Spleen Spleen
5 chr2:86037000-86039200 Enhancers A549 lung
6 chr2:86037000-86041400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr2:86037200-86041400 Enhancers Fetal Lung lung
8 chr2:86037400-86039600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr2:86037600-86039000 Enhancers Pancreas Pancrea
10 chr2:86037600-86039200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr2:86037600-86039200 Enhancers Fetal Intestine Small intestine
12 chr2:86037600-86039200 Enhancers Rectal Mucosa Donor 29 rectum
13 chr2:86037600-86039200 Enhancers Stomach Mucosa stomach
14 chr2:86037600-86039600 Enhancers Lung lung
15 chr2:86037600-86039600 Enhancers NH-A brain
16 chr2:86037600-86039800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
17 chr2:86037600-86039800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
18 chr2:86037600-86039800 Enhancers Muscle Satellite Cultured Cells --
19 chr2:86037600-86039800 Enhancers Aorta Aorta
20 chr2:86037600-86039800 Bivalent Enhancer Fetal Muscle Trunk muscle
21 chr2:86037600-86039800 Enhancers Right Atrium heart
22 chr2:86037600-86040600 Enhancers Skeletal Muscle Male skeletal muscle
23 chr2:86037600-86041400 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr2:86037600-86042600 Enhancers Skeletal Muscle Female skeletal muscle
25 chr2:86037800-86039000 Enhancers Gastric stomach
26 chr2:86037800-86039600 Enhancers HSMM muscle
27 chr2:86038000-86039000 Bivalent Enhancer Placenta Placenta
28 chr2:86038000-86039000 Enhancers Left Ventricle heart
29 chr2:86038000-86039000 Enhancers Rectal Mucosa Donor 31 rectum
30 chr2:86038000-86039000 Enhancers HSMMtube muscle
31 chr2:86038000-86039200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:86038000-86039200 Enhancers Colon Smooth Muscle Colon
33 chr2:86038000-86039400 Enhancers Adipose Nuclei Adipose
34 chr2:86038000-86039600 Enhancers Fetal Stomach stomach
35 chr2:86038000-86039800 Enhancers Ovary ovary
36 chr2:86038200-86038800 Flanking Active TSS Stomach Smooth Muscle stomach
37 chr2:86038200-86039000 Enhancers Esophagus oesophagus
38 chr2:86038200-86039000 Enhancers NHLF lung
39 chr2:86038200-86039200 Weak transcription Brain Cingulate Gyrus brain
40 chr2:86038200-86039200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
41 chr2:86038200-86039400 Enhancers Fetal Muscle Leg muscle
42 chr2:86038400-86038800 Enhancers Colonic Mucosa Colon
43 chr2:86038400-86039000 Flanking Active TSS Osteobl bone
44 chr2:86038400-86039200 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr2:86038600-86038800 Enhancers Primary hematopoietic stem cells short term culture blood
46 chr2:86038600-86039000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
47 chr2:86038600-86039000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
48 chr2:86038600-86039000 Bivalent Enhancer Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr2:86038600-86039000 Bivalent Enhancer Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr2:86038600-86039000 Enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015