Variant report

Variant	rs58666667
Chromosome Location	chr2:86032790-86032791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85954466..85957805-chr2:86032452..86035127,3	MCF-7	breast:
2	chr2:86025368..86028290-chr2:86031457..86033472,3	MCF-7	breast:
3	chr2:86019488..86022075-chr2:86030495..86033177,2	K562	blood:

Variant related genes	Relation type
ENSG00000199687	Chromatin interaction

rs_ID	r²[population]
rs11673740	0.95[ASN][1000 genomes]
rs11673983	0.96[ASN][1000 genomes]
rs11674128	0.95[ASN][1000 genomes]
rs11675032	0.95[ASN][1000 genomes]
rs11676743	0.96[ASN][1000 genomes]
rs11679628	0.96[ASN][1000 genomes]
rs11679814	0.96[ASN][1000 genomes]
rs11679818	0.96[ASN][1000 genomes]
rs11682180	0.95[ASN][1000 genomes]
rs11688602	0.87[ASN][1000 genomes]
rs11690193	0.95[ASN][1000 genomes]
rs11690888	0.95[ASN][1000 genomes]
rs11692513	0.96[ASN][1000 genomes]
rs11895873	0.96[ASN][1000 genomes]
rs13391970	0.96[ASN][1000 genomes]
rs13399063	0.96[ASN][1000 genomes]
rs57085204	0.96[ASN][1000 genomes]
rs57482155	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57648087	0.95[ASN][1000 genomes]
rs58383548	0.95[ASN][1000 genomes]
rs58829348	0.82[ASN][1000 genomes]
rs59757945	1.00[EUR][1000 genomes]
rs59797249	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60313984	1.00[EUR][1000 genomes]
rs61028280	1.00[EUR][1000 genomes]
rs7563145	0.96[ASN][1000 genomes]
rs7590113	0.96[ASN][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86022400-86033800	Weak transcription	Gastric	stomach
2	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
3	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
6	chr2:86024800-86038000	Weak transcription	Ovary	ovary
7	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
8	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
9	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
11	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
14	chr2:86030000-86033000	Weak transcription	HepG2	liver
15	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
16	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:86031400-86033200	Enhancers	A549	lung
18	chr2:86031600-86033000	Enhancers	Liver	Liver
19	chr2:86031600-86033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:86031800-86033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:86032000-86032800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:86032000-86033000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:86032000-86033200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:86032000-86035400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:86032200-86037400	Weak transcription	Fetal Heart	heart
26	chr2:86032200-86037600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:86032400-86032800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:86032600-86037800	Weak transcription	HSMM	muscle

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