Variant report

Variant	rs13399063
Chromosome Location	chr2:86042133-86042134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:86042000-86042150	GM12875	blood:	n/a	n/a
2	SMC3	chr2:86040730-86042327	SK-N-SH	brain:	n/a	chr2:86041505-86041519 chr2:86041037-86041047
3	CTCF	chr2:86042040-86042190	GM12872	blood:	n/a	n/a
4	CTCF	chr2:86042080-86042230	GM12871	blood:	n/a	n/a
5	CTCF	chr2:86042000-86042150	GM12866	blood:	n/a	n/a
6	RAD21	chr2:86040628-86042158	SK-N-SH	brain:	n/a	chr2:86041503-86041515 chr2:86041037-86041047 chr2:86041501-86041520
7	CTCF	chr2:86040813-86042409	A549	lung:	n/a	chr2:86041504-86041520 chr2:86041498-86041519 chr2:86041049-86041062 chr2:86041038-86041048 chr2:86041503-86041521 chr2:86041505-86041518

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85955246..85956833-chr2:86040551..86042336,26	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229498	TF binding region
ENSG00000199687	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11673740	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11673983	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674128	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675032	0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11676743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679814	0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680472	0.80[EUR][1000 genomes]
rs11681094	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11682180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682653	0.95[EUR][1000 genomes]
rs11683378	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11684014	0.88[CEU][hapmap]
rs11688602	0.89[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11690193	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690888	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11691942	1.00[CEU][hapmap]
rs11692513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899219	0.89[CEU][hapmap]
rs13391970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57085204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57482155	0.99[ASN][1000 genomes]
rs57648087	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58383548	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58666667	0.96[ASN][1000 genomes]
rs58829348	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59797249	0.99[ASN][1000 genomes]
rs7563145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
2	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
3	chr2:86037600-86042600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:86039000-86042400	Weak transcription	Left Ventricle	heart
5	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
6	chr2:86040800-86042400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:86040800-86042600	Enhancers	A549	lung
8	chr2:86041000-86042200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:86041000-86042200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:86041000-86042600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr2:86041000-86042600	Enhancers	Pancreas	Pancrea
12	chr2:86041200-86042200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:86041200-86042400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:86041400-86045200	Weak transcription	Ovary	ovary
15	chr2:86041400-86049600	Weak transcription	Lung	lung
16	chr2:86041800-86042200	Weak transcription	Brain Anterior Caudate	brain
17	chr2:86042000-86042200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:86042000-86042200	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr2:86042000-86043400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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