Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86043786..86048456-chr2:86331469..86335365,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132300	Chromatin interaction
ENSG00000068654	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11673740	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11673983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674128	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675032	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11676743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679818	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680472	0.80[EUR][1000 genomes]
rs11681094	0.95[EUR][1000 genomes]
rs11682180	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682653	0.95[EUR][1000 genomes]
rs11683378	0.91[EUR][1000 genomes]
rs11688602	0.88[ASN][1000 genomes]
rs11690193	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690888	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11692513	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57482155	0.99[ASN][1000 genomes]
rs57648087	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58383548	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58666667	0.96[ASN][1000 genomes]
rs58829348	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59797249	0.99[ASN][1000 genomes]
rs7563145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86041400-86045200	Weak transcription	Ovary	ovary
4	chr2:86041400-86049600	Weak transcription	Lung	lung
5	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:86042600-86047400	Weak transcription	A549	lung
7	chr2:86044600-86045000	Flanking Active TSS	K562	blood
8	chr2:86044800-86045400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr2:86044800-86045400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:86044800-86045600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:86044800-86045600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:86044800-86045800	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search: