Variant report

Variant	rs59968392
Chromosome Location	chr2:86134613-86134614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86111166..86115659-chr2:86134509..86137457,4	MCF-7	breast:
2	chr2:86130664..86133250-chr2:86133386..86134942,2	K562	blood:
3	chr2:86127269..86128951-chr2:86134327..86136016,2	K562	blood:

Variant related genes	Relation type
ENSG00000272564	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11891333	0.94[EUR][1000 genomes]
rs17026666	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17026701	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026729	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2438307	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2577776	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4292089	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55716007	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55967160	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57150081	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57178127	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58515922	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58672934	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58686314	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60337023	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60981340	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61477982	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6547646	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6705122	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6717839	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6718632	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6759489	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735737	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73943909	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73945524	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73945530	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73945535	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7570836	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86137800	Weak transcription	NHDF-Ad	bronchial
3	chr2:86129800-86138000	Weak transcription	Fetal Thymus	thymus
4	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:86130600-86138000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86131400-86137800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
8	chr2:86131600-86135400	Enhancers	Brain Hippocampus Middle	brain
9	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:86132000-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:86132400-86135000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:86133200-86134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:86133200-86134800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:86133200-86134800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:86133200-86134800	Weak transcription	Adipose Nuclei	Adipose
16	chr2:86133200-86135000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:86133200-86135000	Weak transcription	Ovary	ovary
18	chr2:86133200-86135000	Weak transcription	Pancreas	Pancrea
19	chr2:86133200-86135000	Weak transcription	Spleen	Spleen
20	chr2:86133200-86135000	Weak transcription	HSMMtube	muscle
21	chr2:86133200-86137600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:86133200-86137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:86133200-86137800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:86133200-86137800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:86133200-86139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:86133600-86135000	Weak transcription	Brain Angular Gyrus	brain
30	chr2:86133800-86135400	Enhancers	Placenta	Placenta
31	chr2:86133800-86136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:86133800-86139000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:86134000-86135000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr2:86134000-86135400	Enhancers	Lung	lung
35	chr2:86134000-86135800	Enhancers	K562	blood
36	chr2:86134000-86136800	Enhancers	HMEC	breast
37	chr2:86134000-86136800	Enhancers	NHEK	skin
38	chr2:86134200-86135000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr2:86134200-86135400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:86134200-86136000	Enhancers	A549	lung
41	chr2:86134400-86135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr2:86134400-86135400	Enhancers	Osteobl	bone
43	chr2:86134400-86136400	Weak transcription	Brain Anterior Caudate	brain
44	chr2:86134400-86136600	Enhancers	HepG2	liver
45	chr2:86134400-86137200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
47	chr2:86134600-86135000	Weak transcription	Right Atrium	heart
48	chr2:86134600-86137800	Weak transcription	Brain Substantia Nigra	brain

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