Variant report

Variant	rs7570836
Chromosome Location	chr2:86141433-86141434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86140957..86144673-chr2:86146213..86150354,4	K562	blood:
2	chr2:86140957..86144482-chr2:86147122..86150354,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86141408-86144322	XLOC_001558
2	lnc-ATOH8-2	chr2:86141404-86142325	XLOC_001558

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11891333	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17026666	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17026701	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026729	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4292089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55716007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967160	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57150081	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57178127	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58515922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58672934	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58686314	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59968392	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60981340	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61477982	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547646	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6705122	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6717839	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718632	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6759489	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735737	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73943909	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73945524	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73945530	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73945535	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
2	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
7	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
8	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
9	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:86135400-86151600	Weak transcription	Lung	lung
11	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
12	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:86137800-86141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:86137800-86141600	Enhancers	HMEC	breast
15	chr2:86137800-86141600	Enhancers	NHDF-Ad	bronchial
16	chr2:86138000-86143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:86138200-86142000	Weak transcription	Aorta	Aorta
18	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:86138600-86141800	Weak transcription	Right Atrium	heart
20	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
21	chr2:86139200-86142000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:86139400-86142200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:86139600-86141600	Weak transcription	Brain Substantia Nigra	brain
24	chr2:86139600-86142000	Weak transcription	Ovary	ovary
25	chr2:86139600-86142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:86139600-86143200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:86139800-86142200	Weak transcription	Brain Angular Gyrus	brain
28	chr2:86139800-86142200	Weak transcription	Brain Anterior Caudate	brain
29	chr2:86139800-86142400	Weak transcription	Stomach Mucosa	stomach
30	chr2:86140000-86142200	Weak transcription	Placenta	Placenta
31	chr2:86140000-86148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:86140200-86142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:86140400-86144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:86140800-86141600	Enhancers	Osteobl	bone
35	chr2:86140800-86142000	Enhancers	Adipose Nuclei	Adipose
36	chr2:86141000-86141600	Genic enhancers	A549	lung
37	chr2:86141000-86141800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:86141000-86142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:86141000-86142400	Enhancers	K562	blood
40	chr2:86141200-86141600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:86141200-86141800	Strong transcription	Brain Hippocampus Middle	brain
42	chr2:86141200-86142200	Strong transcription	Primary T cells from cord blood	blood
43	chr2:86141200-86142200	Strong transcription	Brain Cingulate Gyrus	brain
44	chr2:86141200-86142600	Enhancers	Liver	Liver
45	chr2:86141400-86141600	Enhancers	HSMM	muscle
46	chr2:86141400-86141800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr2:86141400-86142000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr2:86141400-86142200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:86141400-86142400	Enhancers	Hela-S3	cervix
50	chr2:86141400-86142600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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