Variant report

Variant	rs17026666
Chromosome Location	chr2:86074388-86074389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86073388..86076182-chr2:86080776..86083283,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17026701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17026729	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4292089	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55716007	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55967160	0.91[AMR][1000 genomes]
rs57150081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57178127	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58515922	1.00[AMR][1000 genomes]
rs58672934	0.96[AMR][1000 genomes]
rs58686314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59968392	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60981340	0.81[AMR][1000 genomes]
rs61477982	0.91[AMR][1000 genomes]
rs6547646	0.96[AMR][1000 genomes]
rs6705122	0.81[AMR][1000 genomes]
rs6717839	0.91[AMR][1000 genomes]
rs6718632	0.84[AMR][1000 genomes]
rs6747424	0.81[AMR][1000 genomes]
rs6759489	0.84[AMR][1000 genomes]
rs735737	0.81[AMR][1000 genomes]
rs73943909	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73945524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73945530	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73945535	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7570836	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
2	chr2:86055000-86080000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:86055200-86078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:86055200-86080400	Weak transcription	Colonic Mucosa	Colon
5	chr2:86059400-86078400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:86062000-86074400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:86063800-86080200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:86065000-86075400	Strong transcription	Brain Hippocampus Middle	brain
9	chr2:86065000-86075400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr2:86065000-86075800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:86065000-86078400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:86065200-86078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:86065200-86080000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr2:86065400-86079400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:86065600-86078600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:86065800-86075400	Strong transcription	Liver	Liver
17	chr2:86065800-86078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:86065800-86078400	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr2:86066000-86075600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:86066000-86080600	Weak transcription	Small Intestine	intestine
21	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:86066200-86081400	Weak transcription	Right Ventricle	heart
23	chr2:86066400-86091400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:86067000-86074400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:86067000-86099000	Weak transcription	Gastric	stomach
26	chr2:86067200-86087000	Weak transcription	Fetal Brain Male	brain
27	chr2:86067400-86080400	Weak transcription	Left Ventricle	heart
28	chr2:86067400-86084800	Weak transcription	Ovary	ovary
29	chr2:86067600-86074400	Weak transcription	Placenta	Placenta
30	chr2:86067600-86076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:86067600-86078600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:86067600-86078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:86067600-86086200	Weak transcription	Fetal Brain Female	brain
34	chr2:86067800-86075400	Strong transcription	Primary T cells from cord blood	blood
35	chr2:86067800-86080000	Weak transcription	K562	blood
36	chr2:86068600-86077400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr2:86068800-86075400	Strong transcription	A549	lung
38	chr2:86068800-86078400	Strong transcription	Primary B cells from cord blood	blood
39	chr2:86069400-86075400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr2:86069400-86080400	Weak transcription	Stomach Mucosa	stomach
41	chr2:86069600-86078400	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:86070200-86075400	Strong transcription	Brain Cingulate Gyrus	brain
43	chr2:86070400-86078400	Strong transcription	Brain Anterior Caudate	brain
44	chr2:86070600-86074800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:86070600-86075200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:86070600-86078600	Strong transcription	Fetal Muscle Leg	muscle
47	chr2:86070800-86075200	Strong transcription	Brain Substantia Nigra	brain
48	chr2:86070800-86075400	Strong transcription	Adipose Nuclei	Adipose
49	chr2:86070800-86075400	Strong transcription	Brain Angular Gyrus	brain
50	chr2:86070800-86075400	Strong transcription	Lung	lung

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