Variant report

Variant	rs73943909
Chromosome Location	chr2:86143378-86143379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86140957..86144673-chr2:86146213..86150354,4	K562	blood:
2	chr2:86114069..86117033-chr2:86143239..86145488,2	MCF-7	breast:
3	chr2:86140957..86144482-chr2:86147122..86150354,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-2	chr2:86141408-86144322	XLOC_001558
2	lnc-ATOH8-2	chr2:86143376-86143848	NONHSAT072072

Variant related genes	Relation type
ENSG00000232504	Chromatin interaction
ENSG00000115525	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11891333	0.94[EUR][1000 genomes]
rs17026666	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17026701	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4292089	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55716007	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967160	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57150081	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57178127	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58515922	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58672934	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58686314	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59968392	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60981340	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61477982	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547646	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6705122	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6717839	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718632	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6759489	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735737	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73945523	0.83[AFR][1000 genomes]
rs73945524	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73945530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73945535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7570836	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
4	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
5	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
6	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:86135400-86151600	Weak transcription	Lung	lung
8	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
9	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
12	chr2:86140000-86148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:86140400-86144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:86141400-86145000	Weak transcription	NHEK	skin
15	chr2:86141600-86145000	Weak transcription	HMEC	breast
16	chr2:86142000-86143400	Enhancers	Ovary	ovary
17	chr2:86142000-86143600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:86142000-86147200	Weak transcription	Adipose Nuclei	Adipose
19	chr2:86142200-86143400	Genic enhancers	Brain Anterior Caudate	brain
20	chr2:86142200-86145000	Weak transcription	A549	lung
21	chr2:86142200-86155800	Weak transcription	Primary T cells from cord blood	blood
22	chr2:86142400-86143600	Enhancers	Brain Hippocampus Middle	brain
23	chr2:86142400-86143600	Enhancers	Brain Substantia Nigra	brain
24	chr2:86142400-86145000	Weak transcription	Hela-S3	cervix
25	chr2:86142400-86148000	Weak transcription	K562	blood
26	chr2:86142400-86151800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr2:86142400-86157800	Weak transcription	Aorta	Aorta
28	chr2:86142600-86143400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:86142600-86143400	Enhancers	Brain Cingulate Gyrus	brain
30	chr2:86142600-86143400	Weak transcription	Right Atrium	heart
31	chr2:86142600-86147400	Weak transcription	Liver	Liver
32	chr2:86142600-86151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:86142600-86151600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:86142800-86143400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr2:86142800-86143400	Enhancers	Colon Smooth Muscle	Colon
36	chr2:86142800-86143600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:86142800-86143600	Enhancers	NHDF-Ad	bronchial
38	chr2:86143200-86146800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:86143200-86148200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr2:86143200-86148200	Weak transcription	Brain Angular Gyrus	brain
41	chr2:86143200-86148400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:86143200-86150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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