Variant report

Variant	rs6717839
Chromosome Location	chr2:86158539-86158540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86157505..86159597-chr2:86160754..86163331,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11891333	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17026666	0.91[AMR][1000 genomes]
rs17026701	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17026729	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4292089	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55716007	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55967160	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57150081	0.91[AMR][1000 genomes]
rs57178127	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58515922	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58672934	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58686314	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59968392	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60981340	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61477982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547646	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6705122	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6718632	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6759489	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735737	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73943909	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73945524	0.91[AMR][1000 genomes]
rs73945530	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73945535	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7570836	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86152200-86163400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:86152400-86163000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:86152800-86161000	Weak transcription	Liver	Liver
4	chr2:86152800-86162400	Weak transcription	Right Atrium	heart
5	chr2:86153400-86158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86154400-86161000	Weak transcription	Stomach Mucosa	stomach
7	chr2:86154800-86160400	Weak transcription	Osteobl	bone
8	chr2:86154800-86162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:86155000-86162600	Weak transcription	Brain Angular Gyrus	brain
10	chr2:86155000-86162600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:86155200-86162600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:86155400-86159200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:86156000-86159200	Weak transcription	Primary T cells from cord blood	blood
14	chr2:86156000-86159200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr2:86156200-86159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:86156400-86158800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:86156400-86163600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:86156600-86159600	Weak transcription	Fetal Thymus	thymus
19	chr2:86156600-86160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:86156600-86160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:86156600-86163200	Enhancers	Hela-S3	cervix
22	chr2:86156800-86158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:86156800-86159600	Enhancers	A549	lung
24	chr2:86157000-86160800	Weak transcription	NH-A	brain
25	chr2:86157400-86159000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:86157600-86159000	Enhancers	NHEK	skin
27	chr2:86157800-86160400	Weak transcription	K562	blood
28	chr2:86157800-86160800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:86157800-86160800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:86157800-86160800	Weak transcription	Ovary	ovary
31	chr2:86157800-86161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:86157800-86161000	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:86157800-86162400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:86157800-86162600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:86157800-86163000	Weak transcription	Pancreas	Pancrea
36	chr2:86157800-86163000	Weak transcription	Spleen	Spleen
37	chr2:86157800-86163200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr2:86158000-86160400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:86158000-86161000	Weak transcription	Placenta	Placenta
40	chr2:86158000-86162600	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:86158200-86160400	Weak transcription	Adipose Nuclei	Adipose
42	chr2:86158200-86160600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:86158200-86161400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:86158200-86162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:86158200-86162600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:86158400-86160600	Weak transcription	HMEC	breast
47	chr2:86158400-86160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:86158400-86161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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