Variant report

Variant	rs73945535
Chromosome Location	chr2:86124873-86124874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86110287..86113601-chr2:86124119..86126879,3	K562	blood:
2	chr2:85893452..85895413-chr2:86122846..86125699,2	K562	blood:
3	chr2:86112101..86114147-chr2:86124119..86126980,2	K562	blood:
4	chr2:86123033..86125341-chr2:86126269..86129259,2	K562	blood:
5	chr2:86124693..86128492-chr2:86175649..86178541,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168878	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11891333	0.82[EUR][1000 genomes]
rs17026666	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17026701	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17026729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4292089	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55716007	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55967160	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57150081	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57178127	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58515922	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58672934	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58686314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59968392	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60981340	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61477982	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6547646	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6705122	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6717839	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6718632	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6747424	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6759489	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs735737	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73943909	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73945523	0.95[AFR][1000 genomes]
rs73945524	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73945530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570836	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86117400-86126400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:86118200-86126000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:86118200-86126800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr2:86118400-86126600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:86118400-86127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:86118600-86131000	Weak transcription	Thymus	Thymus
7	chr2:86119800-86132200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:86120000-86126600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr2:86120200-86134200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:86120800-86131400	Weak transcription	Pancreas	Pancrea
11	chr2:86121200-86126600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr2:86121400-86127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:86121400-86128800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:86121400-86132000	Weak transcription	Placenta	Placenta
15	chr2:86121600-86125800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:86121600-86126800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:86121600-86129000	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:86121600-86129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:86121600-86131800	Weak transcription	Adipose Nuclei	Adipose
20	chr2:86121800-86127000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:86121800-86128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:86122000-86127000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:86122000-86134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:86123000-86126800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:86123200-86126000	Weak transcription	Brain Substantia Nigra	brain
26	chr2:86123200-86126400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:86123200-86128800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:86123200-86132400	Weak transcription	A549	lung
29	chr2:86123200-86132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:86123800-86125000	Genic enhancers	Brain Hippocampus Middle	brain
31	chr2:86124000-86125200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:86124400-86129000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:86124400-86134000	Weak transcription	Lung	lung
34	chr2:86124600-86125200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:86124800-86125200	Enhancers	Skeletal Muscle Male	skeletal muscle

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