Variant report

Variant	rs6718632
Chromosome Location	chr2:86176084-86176085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86160879..86165285-chr2:86176010..86181999,6	MCF-7	breast:
2	chr2:86174630..86176169-chr2:86176338..86177867,2	MCF-7	breast:
3	chr2:86112745..86122516-chr2:86175080..86185190,27	MCF-7	breast:
4	chr2:86171021..86172691-chr2:86174826..86177732,2	MCF-7	breast:
5	chr2:86124693..86128492-chr2:86175649..86178541,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1158729	0.86[AMR][1000 genomes]
rs11891333	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026666	0.84[AMR][1000 genomes]
rs17026701	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17026729	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2012798	0.90[ASN][1000 genomes]
rs2366959	0.86[AMR][1000 genomes]
rs4292089	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55716007	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55967160	0.81[EUR][1000 genomes]
rs57150081	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57178127	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58515922	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58672934	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58686314	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59968392	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60981340	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61477982	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6547646	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6705122	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717839	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735737	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73943909	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73943920	0.89[ASN][1000 genomes]
rs73945524	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73945530	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73945535	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7570836	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86172800-86176200	Weak transcription	HepG2	liver
2	chr2:86175000-86183600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:86175800-86177600	Enhancers	Pancreas	Pancrea
4	chr2:86175800-86180600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links