Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86178306..86181703-chr2:86184579..86188621,5	MCF-7	breast:
2	chr2:86181209..86184209-chr2:86184954..86187247,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1036554	0.80[ASN][1000 genomes]
rs11891333	0.89[ASN][1000 genomes]
rs13390702	0.80[ASN][1000 genomes]
rs2012798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118521	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34522092	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56326127	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56900464	0.89[AMR][1000 genomes]
rs56977454	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58186343	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58365138	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58515922	0.89[ASN][1000 genomes]
rs58898686	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59835600	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60981340	0.89[ASN][1000 genomes]
rs6705122	0.89[ASN][1000 genomes]
rs6718632	0.89[ASN][1000 genomes]
rs6724025	0.89[AMR][1000 genomes]
rs6747424	0.89[ASN][1000 genomes]
rs6759489	0.89[ASN][1000 genomes]
rs735737	0.89[ASN][1000 genomes]
rs73943946	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7608262	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86178800-86188200	Enhancers	Fetal Muscle Leg	muscle
2	chr2:86180200-86187600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:86180800-86188600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:86181000-86186600	Weak transcription	K562	blood
5	chr2:86181800-86186200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:86182600-86187600	Weak transcription	Esophagus	oesophagus
7	chr2:86183600-86187600	Weak transcription	Pancreas	Pancrea
8	chr2:86183800-86190800	Weak transcription	Stomach Mucosa	stomach
9	chr2:86184200-86186600	Weak transcription	Psoas Muscle	Psoas
10	chr2:86184400-86187600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:86184600-86186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:86184600-86186600	Weak transcription	HSMMtube	muscle
13	chr2:86184600-86188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:86184800-86187400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:86184800-86188200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:86185200-86187000	Enhancers	Fetal Muscle Trunk	muscle
17	chr2:86185600-86186400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:86185800-86187200	Enhancers	A549	lung
19	chr2:86186000-86186200	Enhancers	Placenta	Placenta

Quick Search: