Variant report

Variant	rs1036554
Chromosome Location	chr2:86236099-86236100
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86230802..86233704-chr2:86235020..86238319,3	K562	blood:
2	chr2:86231423..86233743-chr2:86234007..86236166,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10165327	0.81[ASN][1000 genomes]
rs10168635	0.81[ASN][1000 genomes]
rs10174095	0.86[ASN][1000 genomes]
rs10179090	0.81[ASN][1000 genomes]
rs1019591	0.93[ASN][1000 genomes]
rs10427394	0.81[ASN][1000 genomes]
rs11899576	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12612513	0.93[ASN][1000 genomes]
rs12614260	0.93[ASN][1000 genomes]
rs12620810	0.81[ASN][1000 genomes]
rs12622009	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13384563	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13390702	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561328	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17026854	0.95[ASN][1000 genomes]
rs17027011	0.81[ASN][1000 genomes]
rs17584578	0.93[ASN][1000 genomes]
rs17618001	0.93[ASN][1000 genomes]
rs2012798	0.81[ASN][1000 genomes]
rs2118521	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164879	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241437	0.88[ASN][1000 genomes]
rs2278085	0.95[ASN][1000 genomes]
rs2278087	0.93[ASN][1000 genomes]
rs2278088	0.93[ASN][1000 genomes]
rs2288121	0.83[ASN][1000 genomes]
rs2289237	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303340	0.91[ASN][1000 genomes]
rs311562	0.83[ASN][1000 genomes]
rs311566	0.83[ASN][1000 genomes]
rs311567	0.83[ASN][1000 genomes]
rs34522092	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3731819	0.89[ASN][1000 genomes]
rs3770066	0.81[ASN][1000 genomes]
rs3770081	0.89[ASN][1000 genomes]
rs3770087	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770089	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770090	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3810827	0.91[ASN][1000 genomes]
rs3815840	0.83[ASN][1000 genomes]
rs4832242	0.83[ASN][1000 genomes]
rs56104203	0.91[ASN][1000 genomes]
rs56326127	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56977454	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57083584	0.93[ASN][1000 genomes]
rs57398459	0.93[ASN][1000 genomes]
rs58186343	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58365138	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58898686	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59835600	0.93[ASN][1000 genomes]
rs59891296	0.95[AFR][1000 genomes]
rs60649958	0.93[ASN][1000 genomes]
rs6750765	0.90[ASN][1000 genomes]
rs73943920	0.80[ASN][1000 genomes]
rs73943946	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73947314	0.95[ASN][1000 genomes]
rs7608262	0.99[ASN][1000 genomes]
rs918857	0.90[AFR][1000 genomes]
rs918858	0.88[AFR][1000 genomes]
rs9789563	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9973880	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86234200-86238800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86235200-86238400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links