Variant report

Variant	rs58898686
Chromosome Location	chr2:86216909-86216910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86203428..86205643-chr2:86215451..86219080,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10174095	0.83[ASN][1000 genomes]
rs1019591	0.90[ASN][1000 genomes]
rs1036554	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11899576	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12612513	0.90[ASN][1000 genomes]
rs12614260	0.90[ASN][1000 genomes]
rs12622009	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13384563	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13390702	0.97[ASN][1000 genomes]
rs1561328	0.92[ASN][1000 genomes]
rs17026854	0.92[ASN][1000 genomes]
rs17584578	0.90[ASN][1000 genomes]
rs17618001	0.90[ASN][1000 genomes]
rs2012798	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118521	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164879	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241437	0.85[ASN][1000 genomes]
rs2278085	0.92[ASN][1000 genomes]
rs2278087	0.90[ASN][1000 genomes]
rs2278088	0.90[ASN][1000 genomes]
rs2289237	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303340	0.88[ASN][1000 genomes]
rs34522092	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3731819	0.86[ASN][1000 genomes]
rs3770081	0.86[ASN][1000 genomes]
rs3770087	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770089	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770090	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810827	0.88[ASN][1000 genomes]
rs56104203	0.88[ASN][1000 genomes]
rs56326127	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56900464	0.94[AMR][1000 genomes]
rs56977454	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57083584	0.90[ASN][1000 genomes]
rs57398459	0.90[ASN][1000 genomes]
rs58186343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58365138	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59835600	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60649958	0.90[ASN][1000 genomes]
rs6724025	0.94[AMR][1000 genomes]
rs6750765	0.87[ASN][1000 genomes]
rs73943920	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73943946	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73947314	0.92[ASN][1000 genomes]
rs7608262	0.96[ASN][1000 genomes]
rs9789563	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
2	chr2:86207000-86223400	Weak transcription	Liver	Liver
3	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:86213800-86217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:86214400-86217800	Enhancers	Fetal Muscle Leg	muscle
6	chr2:86214600-86218400	Enhancers	K562	blood
7	chr2:86214600-86221200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:86214800-86217200	Enhancers	Placenta	Placenta
9	chr2:86215600-86217800	Enhancers	Psoas Muscle	Psoas
10	chr2:86215600-86221000	Weak transcription	HSMM	muscle
11	chr2:86215800-86219800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:86215800-86221000	Weak transcription	Right Ventricle	heart
13	chr2:86215800-86221000	Weak transcription	Spleen	Spleen
14	chr2:86216000-86217200	Weak transcription	Hela-S3	cervix
15	chr2:86216000-86218200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:86216000-86221000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:86216000-86221000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:86216000-86221000	Weak transcription	Thymus	Thymus
19	chr2:86216000-86221200	Weak transcription	NHDF-Ad	bronchial
20	chr2:86216000-86222600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:86216000-86223400	Weak transcription	Fetal Lung	lung
22	chr2:86216200-86217600	Enhancers	A549	lung
23	chr2:86216200-86219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:86216200-86220800	Weak transcription	Fetal Thymus	thymus
25	chr2:86216200-86221000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:86216200-86221000	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:86216200-86221000	Weak transcription	Ovary	ovary
28	chr2:86216200-86221000	Weak transcription	Stomach Mucosa	stomach
29	chr2:86216200-86221200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr2:86216200-86222800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:86216200-86225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:86216400-86219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:86216400-86219800	Weak transcription	Adipose Nuclei	Adipose
34	chr2:86216400-86220800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr2:86216400-86221000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:86216400-86221000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr2:86216400-86223200	Weak transcription	Pancreas	Pancrea
38	chr2:86216400-86223400	Weak transcription	Fetal Stomach	stomach
39	chr2:86216600-86221200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr2:86216800-86219800	Weak transcription	Fetal Muscle Trunk	muscle

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