Variant report

Variant	rs56900464
Chromosome Location	chr2:86191783-86191784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2012798	0.89[AMR][1000 genomes]
rs2118521	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34522092	0.89[AMR][1000 genomes]
rs56326127	0.89[AMR][1000 genomes]
rs58186343	0.83[AMR][1000 genomes]
rs58365138	0.89[AMR][1000 genomes]
rs58898686	0.94[AMR][1000 genomes]
rs59835600	0.89[AMR][1000 genomes]
rs6724025	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73943920	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86190400-86191800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr2:86190800-86191800	Enhancers	Stomach Mucosa	stomach
3	chr2:86191000-86191800	Active TSS	A549	lung
4	chr2:86191600-86191800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:86191600-86191800	Flanking Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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