Variant report

Variant	rs34522092
Chromosome Location	chr2:86208305-86208306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86203899..86206358-chr2:86207517..86209115,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10174095	0.81[ASN][1000 genomes]
rs1019591	0.88[ASN][1000 genomes]
rs1036554	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11899576	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12612513	0.88[ASN][1000 genomes]
rs12614260	0.88[ASN][1000 genomes]
rs12622009	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13384563	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13390702	0.95[ASN][1000 genomes]
rs1561328	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026854	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17584578	0.88[ASN][1000 genomes]
rs17618001	0.88[ASN][1000 genomes]
rs2012798	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118521	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2164879	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241437	0.83[ASN][1000 genomes]
rs2278085	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2278087	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2278088	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289237	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303340	0.86[ASN][1000 genomes]
rs3731819	0.84[ASN][1000 genomes]
rs3770081	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770087	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770089	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770090	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3810827	0.86[ASN][1000 genomes]
rs56104203	0.86[ASN][1000 genomes]
rs56326127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900464	0.89[AMR][1000 genomes]
rs56977454	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083584	0.88[ASN][1000 genomes]
rs57398459	0.88[ASN][1000 genomes]
rs58186343	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58365138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58898686	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59835600	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60649958	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6724025	0.89[AMR][1000 genomes]
rs6750765	0.85[ASN][1000 genomes]
rs73943920	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73943946	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73947314	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7608262	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9789563	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86208800	Weak transcription	Gastric	stomach
2	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
3	chr2:86205600-86208600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:86205800-86208800	Weak transcription	Spleen	Spleen
5	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:86207000-86211200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:86207000-86211400	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:86207000-86214400	Weak transcription	Adipose Nuclei	Adipose
9	chr2:86207000-86223400	Weak transcription	Liver	Liver
10	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:86208000-86209000	Weak transcription	Hela-S3	cervix

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