Variant report

Variant	rs59835600
Chromosome Location	chr2:86203684-86203685
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86151028..86153839-chr2:86202583..86205571,2	K562	blood:
2	chr17:79646681..79649589-chr2:86203221..86205508,2	MCF-7	breast:
3	chr2:86203428..86205643-chr2:86215451..86219080,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1019591	0.86[ASN][1000 genomes]
rs1036554	0.93[ASN][1000 genomes]
rs11899576	0.91[ASN][1000 genomes]
rs12612513	0.86[ASN][1000 genomes]
rs12614260	0.86[ASN][1000 genomes]
rs12622009	0.92[ASN][1000 genomes]
rs13384563	0.91[ASN][1000 genomes]
rs13390702	0.93[ASN][1000 genomes]
rs1561328	0.88[ASN][1000 genomes]
rs17026854	0.88[ASN][1000 genomes]
rs17584578	0.86[ASN][1000 genomes]
rs17618001	0.86[ASN][1000 genomes]
rs2012798	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118521	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164879	0.92[ASN][1000 genomes]
rs2241437	0.81[ASN][1000 genomes]
rs2278085	0.88[ASN][1000 genomes]
rs2278087	0.86[ASN][1000 genomes]
rs2278088	0.86[ASN][1000 genomes]
rs2289237	0.92[ASN][1000 genomes]
rs2303340	0.84[ASN][1000 genomes]
rs34522092	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3731819	0.82[ASN][1000 genomes]
rs3770081	0.82[ASN][1000 genomes]
rs3770087	0.92[ASN][1000 genomes]
rs3770089	0.92[ASN][1000 genomes]
rs3770090	0.92[ASN][1000 genomes]
rs3810827	0.84[ASN][1000 genomes]
rs56104203	0.84[ASN][1000 genomes]
rs56326127	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56900464	0.89[AMR][1000 genomes]
rs56977454	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57083584	0.86[ASN][1000 genomes]
rs57398459	0.86[ASN][1000 genomes]
rs58186343	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58365138	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58898686	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60649958	0.86[ASN][1000 genomes]
rs6724025	0.89[AMR][1000 genomes]
rs6750765	0.83[ASN][1000 genomes]
rs73943920	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73943946	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73947314	0.88[ASN][1000 genomes]
rs7608262	0.92[ASN][1000 genomes]
rs9789563	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86201800-86204000	Enhancers	Left Ventricle	heart
2	chr2:86201800-86204200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:86202000-86204000	Enhancers	Gastric	stomach
4	chr2:86202200-86205600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:86202200-86206400	Enhancers	Fetal Brain Male	brain
6	chr2:86202400-86203800	Enhancers	Stomach Mucosa	stomach
7	chr2:86202400-86204000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:86202400-86204000	Enhancers	Fetal Heart	heart
9	chr2:86202400-86204000	Enhancers	Right Atrium	heart
10	chr2:86202600-86204800	Weak transcription	Pancreas	Pancrea
11	chr2:86202800-86203800	Enhancers	Fetal Stomach	stomach
12	chr2:86202800-86204000	Enhancers	Brain Germinal Matrix	brain
13	chr2:86202800-86204000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:86202800-86204200	Enhancers	Fetal Muscle Trunk	muscle
15	chr2:86203000-86203800	Enhancers	Adipose Nuclei	Adipose
16	chr2:86203000-86203800	Enhancers	Brain Cingulate Gyrus	brain
17	chr2:86203000-86203800	Weak transcription	Lung	lung
18	chr2:86203000-86204200	Enhancers	Fetal Brain Female	brain
19	chr2:86203200-86203800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:86203200-86203800	Enhancers	Brain Anterior Caudate	brain
21	chr2:86203200-86203800	Enhancers	Brain Hippocampus Middle	brain
22	chr2:86203200-86203800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr2:86203200-86203800	Enhancers	Fetal Lung	lung
24	chr2:86203400-86203800	Enhancers	Esophagus	oesophagus
25	chr2:86203600-86203800	Enhancers	Colon Smooth Muscle	Colon
26	chr2:86203600-86203800	Enhancers	Right Ventricle	heart
27	chr2:86203600-86204000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links