Variant report

Variant	rs58186343
Chromosome Location	chr2:86218400-86218401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86210697..86213277-chr2:86217060..86219061,2	K562	blood:
2	chr2:86203428..86205643-chr2:86215451..86219080,3	K562	blood:
3	chr2:86217426..86219773-chr2:86221522..86225425,4	K562	blood:
4	chr2:86218233..86221715-chr2:86223462..86225425,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10174095	0.83[ASN][1000 genomes]
rs1019591	0.90[ASN][1000 genomes]
rs1036554	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11899576	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12612513	0.90[ASN][1000 genomes]
rs12614260	0.90[ASN][1000 genomes]
rs12622009	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13384563	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13390702	0.97[ASN][1000 genomes]
rs1561328	0.92[ASN][1000 genomes]
rs17026854	0.92[ASN][1000 genomes]
rs17584578	0.90[ASN][1000 genomes]
rs17618001	0.90[ASN][1000 genomes]
rs2012798	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118521	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164879	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241437	0.85[ASN][1000 genomes]
rs2278085	0.92[ASN][1000 genomes]
rs2278087	0.90[ASN][1000 genomes]
rs2278088	0.90[ASN][1000 genomes]
rs2289237	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303340	0.88[ASN][1000 genomes]
rs34522092	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3731819	0.86[ASN][1000 genomes]
rs3770081	0.86[ASN][1000 genomes]
rs3770087	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770089	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770090	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810827	0.88[ASN][1000 genomes]
rs56104203	0.88[ASN][1000 genomes]
rs56326127	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56900464	0.83[AMR][1000 genomes]
rs56977454	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57083584	0.90[ASN][1000 genomes]
rs57398459	0.90[ASN][1000 genomes]
rs58365138	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58898686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59835600	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60649958	0.90[ASN][1000 genomes]
rs6724025	0.83[AMR][1000 genomes]
rs6750765	0.87[ASN][1000 genomes]
rs73943920	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73943946	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73947314	0.92[ASN][1000 genomes]
rs7608262	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9789563	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
2	chr2:86207000-86223400	Weak transcription	Liver	Liver
3	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:86214600-86218400	Enhancers	K562	blood
5	chr2:86214600-86221200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:86215600-86221000	Weak transcription	HSMM	muscle
7	chr2:86215800-86219800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:86215800-86221000	Weak transcription	Right Ventricle	heart
9	chr2:86215800-86221000	Weak transcription	Spleen	Spleen
10	chr2:86216000-86221000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:86216000-86221000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:86216000-86221000	Weak transcription	Thymus	Thymus
13	chr2:86216000-86221200	Weak transcription	NHDF-Ad	bronchial
14	chr2:86216000-86222600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:86216000-86223400	Weak transcription	Fetal Lung	lung
16	chr2:86216200-86219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:86216200-86220800	Weak transcription	Fetal Thymus	thymus
18	chr2:86216200-86221000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:86216200-86221000	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:86216200-86221000	Weak transcription	Ovary	ovary
21	chr2:86216200-86221000	Weak transcription	Stomach Mucosa	stomach
22	chr2:86216200-86221200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:86216200-86222800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr2:86216200-86225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:86216400-86219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:86216400-86219800	Weak transcription	Adipose Nuclei	Adipose
27	chr2:86216400-86220800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:86216400-86221000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:86216400-86221000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:86216400-86223200	Weak transcription	Pancreas	Pancrea
31	chr2:86216400-86223400	Weak transcription	Fetal Stomach	stomach
32	chr2:86216600-86221200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:86216800-86219800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr2:86217200-86220800	Weak transcription	Placenta	Placenta
35	chr2:86217400-86220400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr2:86217400-86221000	Weak transcription	Fetal Heart	heart
37	chr2:86217600-86221200	Weak transcription	A549	lung
38	chr2:86217600-86221200	Weak transcription	Hela-S3	cervix
39	chr2:86218000-86221000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:86218200-86218400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:86218200-86218400	Enhancers	Fetal Muscle Leg	muscle
42	chr2:86218200-86218400	Enhancers	Gastric	stomach
43	chr2:86218200-86218400	Enhancers	Psoas Muscle	Psoas
44	chr2:86218200-86218800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr2:86218400-86219800	Weak transcription	K562	blood
46	chr2:86218400-86220800	Weak transcription	Fetal Muscle Leg	muscle
47	chr2:86218400-86221000	Weak transcription	Psoas Muscle	Psoas
48	chr2:86218400-86221200	Weak transcription	Gastric	stomach
49	chr2:86218400-86223000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links