Variant report

Variant	rs58365138
Chromosome Location	chr2:86213105-86213106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86210697..86213277-chr2:86217060..86219061,2	K562	blood:
2	chr2:86203874..86206783-chr2:86210443..86213436,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10174095	0.81[ASN][1000 genomes]
rs1019591	0.88[ASN][1000 genomes]
rs1036554	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11899576	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12612513	0.88[ASN][1000 genomes]
rs12614260	0.88[ASN][1000 genomes]
rs12622009	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13384563	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13390702	0.95[ASN][1000 genomes]
rs1561328	0.90[ASN][1000 genomes]
rs17026854	0.90[ASN][1000 genomes]
rs17584578	0.88[ASN][1000 genomes]
rs17618001	0.88[ASN][1000 genomes]
rs2012798	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118521	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2164879	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241437	0.83[ASN][1000 genomes]
rs2278085	0.90[ASN][1000 genomes]
rs2278087	0.88[ASN][1000 genomes]
rs2278088	0.88[ASN][1000 genomes]
rs2289237	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303340	0.86[ASN][1000 genomes]
rs34522092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731819	0.84[ASN][1000 genomes]
rs3770081	0.84[ASN][1000 genomes]
rs3770087	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770089	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770090	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3810827	0.86[ASN][1000 genomes]
rs56104203	0.86[ASN][1000 genomes]
rs56326127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900464	0.89[AMR][1000 genomes]
rs56977454	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083584	0.88[ASN][1000 genomes]
rs57398459	0.88[ASN][1000 genomes]
rs58186343	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58898686	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59835600	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60649958	0.88[ASN][1000 genomes]
rs6724025	0.89[AMR][1000 genomes]
rs6750765	0.85[ASN][1000 genomes]
rs73943920	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73943946	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73947314	0.90[ASN][1000 genomes]
rs7608262	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9789563	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
2	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:86207000-86214400	Weak transcription	Adipose Nuclei	Adipose
4	chr2:86207000-86223400	Weak transcription	Liver	Liver
5	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:86209000-86215600	Weak transcription	Spleen	Spleen
7	chr2:86211600-86214400	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:86211800-86215800	Weak transcription	Thymus	Thymus
9	chr2:86212000-86214400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:86212200-86214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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