Variant report

Variant	rs55716007
Chromosome Location	chr2:86140088-86140089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86137885..86140851-chr2:86180033..86182072,2	MCF-7	breast:
2	chr2:86131881..86134262-chr2:86138041..86140281,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11891333	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17026666	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17026701	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026729	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4292089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967160	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57150081	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57178127	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58515922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58672934	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58686314	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59968392	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60981340	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61477982	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547646	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6705122	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6717839	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718632	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6747424	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6759489	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735737	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73943909	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73945524	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73945530	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73945535	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7570836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86128600-86141200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:86129800-86141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:86131400-86142400	Weak transcription	Esophagus	oesophagus
4	chr2:86131800-86141600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:86133200-86142800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:86133200-86149200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:86133200-86152000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:86134400-86148000	Weak transcription	Thymus	Thymus
9	chr2:86135400-86143800	Weak transcription	Spleen	Spleen
10	chr2:86135400-86148000	Weak transcription	Pancreas	Pancrea
11	chr2:86135400-86151600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:86135400-86151600	Weak transcription	Lung	lung
13	chr2:86135400-86152600	Weak transcription	Psoas Muscle	Psoas
14	chr2:86137400-86143600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:86137800-86140400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:86137800-86141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:86137800-86141600	Enhancers	HMEC	breast
18	chr2:86137800-86141600	Enhancers	NHDF-Ad	bronchial
19	chr2:86138000-86140600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:86138000-86143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:86138200-86142000	Weak transcription	Aorta	Aorta
22	chr2:86138200-86151600	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:86138400-86141400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:86138600-86141200	Weak transcription	Liver	Liver
25	chr2:86138600-86141800	Weak transcription	Right Atrium	heart
26	chr2:86138600-86147400	Weak transcription	Fetal Thymus	thymus
27	chr2:86138800-86141400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:86139200-86142000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:86139400-86142200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:86139600-86140200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:86139600-86140400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:86139600-86140400	Enhancers	Osteobl	bone
33	chr2:86139600-86141000	Weak transcription	K562	blood
34	chr2:86139600-86141400	Enhancers	NHEK	skin
35	chr2:86139600-86141600	Weak transcription	Brain Substantia Nigra	brain
36	chr2:86139600-86142000	Weak transcription	Ovary	ovary
37	chr2:86139600-86142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:86139600-86143200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:86139800-86140200	Weak transcription	HSMM	muscle
40	chr2:86139800-86140800	Weak transcription	Adipose Nuclei	Adipose
41	chr2:86139800-86141000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:86139800-86141000	Weak transcription	A549	lung
43	chr2:86139800-86141200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:86139800-86141200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:86139800-86141200	Weak transcription	Brain Hippocampus Middle	brain
46	chr2:86139800-86141400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:86139800-86141400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr2:86139800-86141400	Weak transcription	Hela-S3	cervix
49	chr2:86139800-86142200	Weak transcription	Brain Angular Gyrus	brain
50	chr2:86139800-86142200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links