Variant report

Variant	rs2626817
Chromosome Location	chr5:180237653-180237654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:270)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:270 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr5:180237151-180237849	HepG2	liver:	n/a	n/a
2	TEAD4	chr5:180237018-180237763	A549	lung:	n/a	n/a
3	POLR2A	chr5:180236577-180238179	H1-neurons	neurons:	n/a	n/a
4	POU2F2	chr5:180236615-180237689	GM12891	blood:	n/a	n/a
5	POLR2A	chr5:180237158-180238097	U87	brain:	n/a	n/a
6	POLR2A	chr5:180236492-180238275	K562	blood:	n/a	n/a
7	POLR2A	chr5:180236671-180238128	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr5:180236638-180238242	MCF-7	breast:	n/a	n/a
9	REST	chr5:180237133-180238287	HL-60	blood:	n/a	n/a
10	POLR2A	chr5:180236762-180238067	H1-hESC	embryonic stem cell:	n/a	n/a
11	EP300	chr5:180237103-180237857	HepG2	liver:	n/a	n/a
12	NFATC1	chr5:180237128-180237852	GM12878	blood:	n/a	n/a
13	POLR2A	chr5:180236597-180238220	K562	blood:	n/a	n/a
14	TAF1	chr5:180237631-180237844	GM12892	blood:	n/a	n/a
15	MYC	chr5:180237209-180237663	HepG2	liver:	n/a	n/a
16	POLR2A	chr5:180236628-180238245	ProgFib	skin:	n/a	n/a
17	POLR2A	chr5:180237140-180238173	GM12892	blood:	n/a	n/a
18	POLR2A	chr5:180236695-180237989	Gliobla	brain:	n/a	n/a
19	FOXM1	chr5:180237139-180238297	GM12878	blood:	n/a	n/a
20	TCF12	chr5:180237126-180237673	HepG2	liver:	n/a	n/a
21	GABPA	chr5:180236714-180237678	K562	blood:	n/a	n/a
22	PAX5	chr5:180237152-180238149	GM12878	blood:	n/a	n/a
23	MAX	chr5:180236621-180238346	ECC-1	luminal epithelium:	n/a	n/a
24	ETS1	chr5:180236598-180238132	K562	blood:	n/a	n/a
25	TAF1	chr5:180236709-180238343	ECC-1	luminal epithelium:	n/a	n/a
26	PML	chr5:180236588-180237940	K562	blood:	n/a	n/a
27	REST	chr5:180237619-180237971	SK-N-SH	brain:	n/a	n/a
28	CBX3	chr5:180237201-180237752	K562	blood:	n/a	n/a
29	POLR2A	chr5:180236692-180238131	HUVEC	blood vessel:	n/a	n/a
30	CEBPD	chr5:180236736-180237740	K562	blood:	n/a	n/a
31	POLR2A	chr5:180236562-180238270	SK-N-SH	brain:	n/a	n/a
32	PML	chr5:180236626-180238033	MCF-7	breast:	n/a	n/a
33	REST	chr5:180236181-180238651	H1-neurons	neurons:	n/a	n/a
34	POLR2A	chr5:180236604-180238298	ECC-1	luminal epithelium:	n/a	n/a
35	HDAC2	chr5:180236581-180238312	MCF-7	breast:	n/a	n/a
36	POLR2A	chr5:180236678-180238232	GM12878	blood:	n/a	n/a
37	MAX	chr5:180236541-180238314	HepG2	liver:	n/a	n/a
38	ELF1	chr5:180236701-180237806	SK-N-SH	brain:	n/a	chr5:180237204-180237217
39	TAF1	chr5:180237042-180237903	H1-neurons	neurons:	n/a	n/a
40	YY1	chr5:180237105-180237752	K562	blood:	n/a	n/a
41	HEY1	chr5:180237175-180238053	HepG2	liver:	n/a	n/a
42	TAF1	chr5:180236618-180238188	H1-neurons	neurons:	n/a	n/a
43	NR2F2	chr5:180237303-180238043	MCF-7	breast:	n/a	n/a
44	PML	chr5:180237133-180237912	K562	blood:	n/a	n/a
45	POLR2A	chr5:180236498-180238380	GM12892	blood:	n/a	n/a
46	ATF3	chr5:180237170-180237691	A549	lung:	n/a	n/a
47	TAF1	chr5:180237156-180238090	HepG2	liver:	n/a	n/a
48	ZEB1	chr5:180237079-180238086	GM12878	blood:	n/a	n/a
49	POLR2A	chr5:180236655-180238141	Hela-S3	cervix:	n/a	n/a
50	HEY1	chr5:180236550-180238351	HepG2	liver:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:180235539..180242527-chr5:180285126..180289932,26	MCF-7	breast:
2	chr5:179718262..179720717-chr5:180237170..180239607,2	MCF-7	breast:
3	chr5:180235849..180243122-chr5:180284007..180290583,16	MCF-7	breast:
4	chr5:180234090..180241537-chr5:180284888..180291277,19	K562	blood:
5	chr5:180234969..180240620-chr5:180256376..180260296,6	K562	blood:
6	chr5:180237373..180239969-chr5:180687144..180689846,2	MCF-7	breast:
7	chr5:180235755..180238174-chr5:180477599..180480033,2	MCF-7	breast:
8	chr5:180236324..180238724-chr6:44214143..44216444,2	MCF-7	breast:
9	chr5:180236072..180238455-chr5:180650563..180652075,2	K562	blood:
10	chr5:180236252..180239102-chr5:180648903..180651470,3	MCF-7	breast:
11	chr5:180235829..180239179-chr5:180240712..180247762,18	K562	blood:
12	chr5:180236822..180238933-chr5:180649093..180651031,2	MCF-7	breast:
13	chr5:180236869..180238700-chr5:180478692..180481089,2	MCF-7	breast:
14	chr17:57917996..57919832-chr5:180235376..180237856,2	MCF-7	breast:
15	chr5:180235718..180243084-chr5:180284888..180290652,13	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP62-3	chr5:180237649-180237920	NONHSAT105811
2	lnc-BTNL8-6	chr5:180237297-180238375	NONHSAT105819

No data

Variant related genes	Relation type
MGAT1	TF binding region
ENSG00000248367	Chromatin interaction
ENSG00000183718	Chromatin interaction
ENSG00000096384	Chromatin interaction
ENSG00000264732	Chromatin interaction
ENSG00000050748	Chromatin interaction
ENSG00000165810	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000131446	Chromatin interaction
ENSG00000248275	Chromatin interaction
ENSG00000146063	Chromatin interaction
ENSG00000245060	Chromatin interaction
ENSG00000196670	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10464106	0.80[EUR][1000 genomes]
rs10464107	0.84[ASN][1000 genomes]
rs10464108	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10903268	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10903270	0.84[ASN][1000 genomes]
rs11249746	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11249747	0.84[ASN][1000 genomes]
rs12054728	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12054818	0.86[ASN][1000 genomes]
rs12054821	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12054946	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12054948	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12514155	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12518677	0.84[ASN][1000 genomes]
rs12521205	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2129059	0.85[EUR][1000 genomes]
rs2619733	0.89[EUR][1000 genomes]
rs2619734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619735	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619736	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2619737	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2626813	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2626814	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34060154	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35418092	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35747419	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36000194	0.84[AMR][1000 genomes]
rs3733749	0.85[ASN][1000 genomes]
rs3733750	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3806861	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3806862	0.84[AMR][1000 genomes]
rs3806863	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3806864	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3806865	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3806866	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3822408	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57597025	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57876091	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58072284	0.86[EUR][1000 genomes]
rs58794502	0.87[EUR][1000 genomes]
rs58982582	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59085476	0.86[ASN][1000 genomes]
rs61343324	0.87[EUR][1000 genomes]
rs62405452	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62405453	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62405454	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62405457	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62405459	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62407760	0.84[ASN][1000 genomes]
rs62407761	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62407762	0.84[ASN][1000 genomes]
rs62407763	0.84[ASN][1000 genomes]
rs62407764	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62407765	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62407793	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624335	0.83[ASN][1000 genomes]
rs6861358	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6867984	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6871213	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6872096	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6872629	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6883373	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6883883	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6887410	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6893442	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6898961	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72648854	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72648855	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72650615	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72650616	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72650617	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72650618	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72650619	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
2	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
6	nsv533204	chr5:180008319-180273638	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
7	nsv1015152	chr5:180014800-180567614	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	nsv537987	chr5:180014800-180567614	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	nsv1034993	chr5:180059323-180686563	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
10	nsv534263	chr5:180063182-180696806	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	166 gene(s)	inside rSNPs	diseases
11	nsv1033330	chr5:180063241-180256969	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv537988	chr5:180063241-180256969	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv1029282	chr5:180069992-180251755	Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
14	nsv1025669	chr5:180069992-180686563	Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
15	esv2757149	chr5:180079970-180245224	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv2759399	chr5:180079970-180281476	Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
17	esv2758033	chr5:180087198-180281476	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
18	nsv537993	chr5:180119301-180686563	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	158 gene(s)	inside rSNPs	diseases
19	nsv1026978	chr5:180137823-180686563	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
20	nsv949443	chr5:180144688-180503368	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
21	nsv1032677	chr5:180151997-180686563	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
22	nsv1016991	chr5:180152407-180256970	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
23	nsv537994	chr5:180152407-180256970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
24	nsv469692	chr5:180185452-180360834	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
25	nsv482702	chr5:180185452-180360834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
26	nsv1022107	chr5:180203044-180686563	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
27	nsv1033854	chr5:180208441-180686563	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
28	nsv537995	chr5:180208441-180686563	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
29	nsv1033472	chr5:180208501-180575682	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
30	nsv537996	chr5:180208501-180575682	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
31	nsv469788	chr5:180210102-180403232	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
32	nsv482337	chr5:180210102-180403232	Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
33	nsv1018788	chr5:180216969-180686563	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
34	nsv1024379	chr5:180217029-180686563	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
35	nsv537997	chr5:180217029-180686563	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
36	nsv1032399	chr5:180229033-180429831	Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
37	nsv537998	chr5:180229033-180429831	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
38	nsv1027391	chr5:180229033-180447744	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
39	nsv1018245	chr5:180229033-180686563	Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
40	nsv537999	chr5:180229033-180686563	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
41	nsv428133	chr5:180232451-180786488	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
42	nsv1032922	chr5:180234136-180429831	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
43	nsv1027735	chr5:180234136-180447744	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
44	nsv538000	chr5:180234136-180447744	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
45	nsv1028360	chr5:180234136-180686563	Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:180235000-180238200	Active TSS	Ovary	ovary
2	chr5:180236000-180238000	Active TSS	Lung	lung
3	chr5:180236000-180238000	Active TSS	Stomach Mucosa	stomach
4	chr5:180236000-180238000	Active TSS	NHLF	lung
5	chr5:180236000-180238400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr5:180236000-180238400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:180236000-180238400	Active TSS	Psoas Muscle	Psoas
8	chr5:180236000-180238600	Active TSS	Aorta	Aorta
9	chr5:180236200-180237800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:180236200-180238000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:180236200-180238000	Active TSS	Brain Angular Gyrus	brain
12	chr5:180236200-180238000	Active TSS	Colonic Mucosa	Colon
13	chr5:180236200-180238000	Active TSS	Fetal Muscle Trunk	muscle
14	chr5:180236200-180238000	Active TSS	GM12878-XiMat	blood
15	chr5:180236200-180238000	Active TSS	HSMMtube	muscle
16	chr5:180236200-180238200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr5:180236200-180238200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:180236200-180238200	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr5:180236200-180238200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:180236200-180238200	Active TSS	Brain Germinal Matrix	brain
21	chr5:180236200-180238200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr5:180236200-180238200	Active TSS	A549	lung
23	chr5:180236200-180238200	Active TSS	K562	blood
24	chr5:180236200-180238200	Active TSS	NHDF-Ad	bronchial
25	chr5:180236200-180238400	Active TSS	H1 Cell Line	embryonic stem cell
26	chr5:180236200-180238400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:180236200-180238400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:180236200-180238400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:180236200-180238400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:180236200-180238400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:180236200-180238400	Active TSS	Esophagus	oesophagus
32	chr5:180236200-180238400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr5:180236200-180238400	Active TSS	Fetal Stomach	stomach
34	chr5:180236200-180238400	Active TSS	Left Ventricle	heart
35	chr5:180236200-180238400	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr5:180236200-180238600	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr5:180236200-180238600	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr5:180236200-180238800	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr5:180236200-180239400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr5:180236400-180237800	Active TSS	Muscle Satellite Cultured Cells	--
41	chr5:180236400-180238000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr5:180236400-180238000	Active TSS	Gastric	stomach
43	chr5:180236400-180238200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:180236400-180238200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:180236400-180238200	Active TSS	Colon Smooth Muscle	Colon
46	chr5:180236400-180238200	Active TSS	Fetal Intestine Small	intestine
47	chr5:180236400-180238200	Active TSS	Placenta Amnion	Placenta Amnion
48	chr5:180236400-180238200	Active TSS	HSMM	muscle
49	chr5:180236400-180238400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr5:180236400-180238400	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links