The 2.0 version of rSNPBase

Variant report

Variant rs3806864
Chromosome Location chr5:180230486-180230487
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180228800-180230600 Active TSS Lung lung
2 chr5:180228800-180230800 Active TSS Small Intestine intestine
3 chr5:180228800-180231000 Flanking Active TSS Brain Germinal Matrix brain
4 chr5:180229000-180230600 Active TSS ES-I3 Cell Line embryonic stem cell
5 chr5:180229000-180230600 Active TSS H9 Cell Line embryonic stem cell
6 chr5:180229000-180230600 Active TSS Breast Myoepithelial Primary Cells Breast
7 chr5:180229000-180230600 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
8 chr5:180229000-180230800 Active TSS Brain Hippocampus Middle brain
9 chr5:180229000-180230800 Active TSS Psoas Muscle Psoas
10 chr5:180229000-180230800 Active TSS Rectal Smooth Muscle rectum
11 chr5:180229000-180231000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:180229000-180231000 Active TSS Duodenum Smooth Muscle Duodenum
13 chr5:180229000-180231200 Active TSS Primary T killer memory cells from peripheral blood blood
14 chr5:180229200-180230600 Active TSS Brain Inferior Temporal Lobe brain
15 chr5:180229200-180230600 Active TSS GM12878-XiMat blood
16 chr5:180229200-180230600 Active TSS Monocytes-CD14+_RO01746 blood
17 chr5:180229200-180230800 Active TSS Primary B cells from peripheral blood blood
18 chr5:180229200-180230800 Active TSS Primary T cells fromperipheralblood blood
19 chr5:180229200-180230800 Active TSS Primary T helper naive cells from peripheral blood blood
20 chr5:180229200-180230800 Active TSS Primary T regulatory cells fromperipheralblood blood
21 chr5:180229200-180230800 Active TSS Rectal Mucosa Donor 29 rectum
22 chr5:180229200-180231000 Active TSS Primary monocytes fromperipheralblood blood
23 chr5:180229200-180231000 Active TSS Primary T cells from cord blood blood
24 chr5:180229200-180231000 Active TSS Primary T helper memory cells from peripheral blood 2 blood
25 chr5:180229200-180231000 Active TSS Primary T helper cells PMA-I stimulated --
26 chr5:180229200-180231000 Active TSS Primary Natural Killer cells fromperipheralblood blood
27 chr5:180229200-180231000 Active TSS Primary T killer naive cells fromperipheralblood blood
28 chr5:180229200-180231200 Active TSS Thymus Thymus
29 chr5:180229400-180230800 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
30 chr5:180229400-180230800 Transcr. at gene 5' and 3' Right Atrium heart
31 chr5:180229400-180232200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
32 chr5:180229400-180232200 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
33 chr5:180229600-180230800 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
34 chr5:180229600-180233600 Enhancers Fetal Brain Male brain
35 chr5:180230000-180230600 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
36 chr5:180230000-180230600 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
37 chr5:180230000-180230600 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
38 chr5:180230000-180230800 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr5:180230000-180230800 Flanking Active TSS Fetal Muscle Trunk muscle
40 chr5:180230000-180230800 Flanking Active TSS Fetal Stomach stomach
41 chr5:180230000-180230800 Flanking Active TSS Pancreas Pancrea
42 chr5:180230000-180230800 Flanking Active TSS Right Ventricle heart
43 chr5:180230000-180231000 Flanking Active TSS Muscle Satellite Cultured Cells --
44 chr5:180230000-180231000 Flanking Active TSS Fetal Intestine Large intestine
45 chr5:180230000-180231200 Flanking Active TSS Fetal Muscle Leg muscle
46 chr5:180230000-180231200 Flanking Active TSS Placenta Placenta
47 chr5:180230000-180231200 Flanking Active TSS HSMM muscle
48 chr5:180230000-180231400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr5:180230000-180231400 Flanking Active TSS HMEC breast
50 chr5:180230000-180231600 Flanking Active TSS Colonic Mucosa Colon

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Last update: Aug 31, 2015