Variant report

Variant	rs3806865
Chromosome Location	chr5:180230642-180230643
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:57)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:57 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr5:180230532-180231250	GM12878	blood:	n/a	n/a
2	PAX5	chr5:180230443-180231664	GM12878	blood:	n/a	chr5:180230536-180230545
3	YY1	chr5:180230605-180231152	GM12892	blood:	n/a	n/a
4	TCF3	chr5:180230568-180231272	GM12878	blood:	n/a	n/a
5	POLR2A	chr5:180230558-180230969	GM12891	blood:	n/a	n/a
6	E2F6	chr5:180230323-180230674	H1-hESC	embryonic stem cell:	n/a	chr5:180230455-180230462
7	POU2F2	chr5:180230576-180231245	GM12878	blood:	n/a	n/a
8	CBX3	chr5:180230256-180231419	K562	blood:	n/a	n/a
9	POLR2A	chr5:180230458-180231364	GM12891	blood:	n/a	n/a
10	REST	chr5:180230105-180231197	HL-60	blood:	n/a	chr5:180230750-180230763 chr5:180230578-180230587
11	POLR2A	chr5:180228985-180231107	K562	blood:	n/a	n/a
12	E2F6	chr5:180230558-180231060	K562	blood:	n/a	n/a
13	MTA3	chr5:180230044-180232616	GM12878	blood:	n/a	n/a
14	POLR2A	chr5:180230263-180231555	GM12892	blood:	n/a	n/a
15	NFIC	chr5:180230565-180231542	GM12878	blood:	n/a	n/a
16	POLR2A	chr5:180230358-180231598	GM12878	blood:	n/a	n/a
17	RUNX3	chr5:180230120-180232520	GM12878	blood:	n/a	chr5:180230966-180230981
18	STAT5A	chr5:180230606-180231415	GM12878	blood:	n/a	chr5:180230745-180230757
19	CTCF	chr5:180230640-180230790	GM12867	blood:	n/a	n/a
20	POU2F2	chr5:180230611-180231253	GM12891	blood:	n/a	n/a
21	POLR2A	chr5:180229247-180231281	HL-60	blood:	n/a	n/a
22	PAX5	chr5:180230640-180231213	GM12878	blood:	n/a	n/a
23	CTCF	chr5:180230620-180230770	GM12874	blood:	n/a	n/a
24	POLR2A	chr5:180229292-180231676	GM12892	blood:	n/a	n/a
25	POLR2A	chr5:180230538-180232448	GM12878	blood:	n/a	n/a
26	POLR2A	chr5:180230581-180231304	GM12891	blood:	n/a	n/a
27	POLR2A	chr5:180230333-180231236	GM12892	blood:	n/a	n/a
28	MTA3	chr5:180230172-180232498	GM12878	blood:	n/a	n/a
29	CTCF	chr5:180230520-180230670	GM12873	blood:	n/a	n/a
30	MXI1	chr5:180228523-180230694	IMR90	lung:	n/a	n/a
31	POLR2A	chr5:180230483-180231348	GM12878	blood:	n/a	n/a
32	MAX	chr5:180230216-180231078	H1-hESC	embryonic stem cell:	n/a	chr5:180230236-180230245
33	POLR2A	chr5:180230412-180231081	GM12892	blood:	n/a	n/a
34	POLR2A	chr5:180230483-180231117	GM12891	blood:	n/a	n/a
35	EBF1	chr5:180230606-180231331	GM12878	blood:	n/a	n/a
36	POLR2A	chr5:180229035-180231559	K562	blood:	n/a	n/a
37	PML	chr5:180229228-180232547	GM12878	blood:	n/a	n/a
38	POLR2A	chr5:180229250-180232553	GM12878	blood:	n/a	n/a
39	CTCF	chr5:180230380-180230670	GM12873	blood:	n/a	chr5:180230405-180230414
40	BCLAF1	chr5:180230612-180231315	GM12878	blood:	n/a	n/a
41	RUNX3	chr5:180230204-180231693	GM12878	blood:	n/a	chr5:180230966-180230981
42	ATF2	chr5:180230642-180231278	GM12878	blood:	n/a	n/a
43	E2F6	chr5:180230137-180230980	H1-hESC	embryonic stem cell:	n/a	chr5:180230455-180230462 chr5:180230311-180230321
44	MAX	chr5:180230631-180231084	K562	blood:	n/a	n/a
45	MAX	chr5:180230237-180231016	H1-hESC	embryonic stem cell:	n/a	n/a
46	NR2F2	chr5:180230557-180231173	K562	blood:	n/a	n/a
47	POLR2A	chr5:180230316-180231605	GM12878	blood:	n/a	n/a
48	CEBPB	chr5:180230500-180231652	GM12878	blood:	n/a	n/a
49	TEAD4	chr5:180230293-180231316	K562	blood:	n/a	n/a
50	ELF1	chr5:180229277-180231627	GM12878	blood:	n/a	chr5:180229425-180229437

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:180227414..180232885-chr5:180286019..180290085,8	K562	blood:
2	chr5:180229701..180231391-chr5:180258127..180259793,2	K562	blood:
3	chr5:180228019..180233439-chr5:180285963..180289843,10	MCF-7	breast:
4	chr5:180228489..180231362-chr5:180631934..180633728,2	MCF-7	breast:
5	chr5:180228575..180230835-chr5:180669512..180671482,2	K562	blood:
6	chr5:180228090..180233792-chr5:180285929..180290144,13	MCF-7	breast:
7	chr5:180227376..180231453-chr5:180286019..180289801,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTNL8-7	chr5:180230568-180230967	l_3082_chr5:180229467-180230967_thyroid

No data

Variant related genes	Relation type
MGAT1	TF binding region
ENSG00000204628	Chromatin interaction
ENSG00000245060	Chromatin interaction
ENSG00000196670	Chromatin interaction
ENSG00000146054	Chromatin interaction
ENSG00000248514	Chromatin interaction
ENSG00000264549	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10464106	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10464108	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10903268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11249746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12054728	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12054821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12054946	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12054948	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12514155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12521205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2129059	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256371	0.86[ASN][1000 genomes]
rs2619733	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2619734	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2619735	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2619736	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2619737	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626813	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626814	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626817	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34060154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35418092	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35747419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36000194	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3733750	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3806861	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4700985	0.91[AFR][1000 genomes]
rs57597025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57876091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58072284	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs583714	0.86[ASN][1000 genomes]
rs58794502	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58982582	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61343324	0.87[EUR][1000 genomes]
rs618717	0.84[ASN][1000 genomes]
rs621722	0.86[ASN][1000 genomes]
rs62405452	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405454	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405458	0.87[AFR][1000 genomes]
rs62405459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407767	0.98[ASN][1000 genomes]
rs62407768	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62407769	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62407793	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs645845	0.86[ASN][1000 genomes]
rs647131	0.86[ASN][1000 genomes]
rs662474	0.86[ASN][1000 genomes]
rs669395	0.86[ASN][1000 genomes]
rs6861358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872629	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6883373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885157	0.88[EUR][1000 genomes]
rs6887410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6893442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898961	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs694749	0.86[ASN][1000 genomes]
rs72549454	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72648854	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72648855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
2	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
6	nsv533204	chr5:180008319-180273638	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
7	nsv1015152	chr5:180014800-180567614	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	nsv537987	chr5:180014800-180567614	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	nsv1034993	chr5:180059323-180686563	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
10	nsv534263	chr5:180063182-180696806	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	166 gene(s)	inside rSNPs	diseases
11	nsv1033330	chr5:180063241-180256969	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv537988	chr5:180063241-180256969	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv1029282	chr5:180069992-180251755	Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
14	nsv1025669	chr5:180069992-180686563	Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
15	esv2757149	chr5:180079970-180245224	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv2759399	chr5:180079970-180281476	Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
17	esv2758033	chr5:180087198-180281476	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
18	nsv537993	chr5:180119301-180686563	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	158 gene(s)	inside rSNPs	diseases
19	nsv1026978	chr5:180137823-180686563	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
20	nsv949443	chr5:180144688-180503368	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
21	nsv1032677	chr5:180151997-180686563	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
22	nsv1016991	chr5:180152407-180256970	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
23	nsv537994	chr5:180152407-180256970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
24	nsv469692	chr5:180185452-180360834	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
25	nsv482702	chr5:180185452-180360834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
26	nsv1022107	chr5:180203044-180686563	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
27	nsv1033854	chr5:180208441-180686563	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
28	nsv537995	chr5:180208441-180686563	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
29	nsv1033472	chr5:180208501-180575682	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
30	nsv537996	chr5:180208501-180575682	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
31	nsv469788	chr5:180210102-180403232	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
32	nsv482337	chr5:180210102-180403232	Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
33	nsv1018788	chr5:180216969-180686563	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
34	nsv1024379	chr5:180217029-180686563	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
35	nsv537997	chr5:180217029-180686563	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
36	nsv1032399	chr5:180229033-180429831	Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
37	nsv537998	chr5:180229033-180429831	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
38	nsv1027391	chr5:180229033-180447744	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
39	nsv1018245	chr5:180229033-180686563	Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
40	nsv537999	chr5:180229033-180686563	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:180228800-180230800	Active TSS	Small Intestine	intestine
2	chr5:180228800-180231000	Flanking Active TSS	Brain Germinal Matrix	brain
3	chr5:180229000-180230800	Active TSS	Brain Hippocampus Middle	brain
4	chr5:180229000-180230800	Active TSS	Psoas Muscle	Psoas
5	chr5:180229000-180230800	Active TSS	Rectal Smooth Muscle	rectum
6	chr5:180229000-180231000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:180229000-180231000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr5:180229000-180231200	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr5:180229200-180230800	Active TSS	Primary B cells from peripheral blood	blood
10	chr5:180229200-180230800	Active TSS	Primary T cells fromperipheralblood	blood
11	chr5:180229200-180230800	Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr5:180229200-180230800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr5:180229200-180230800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr5:180229200-180231000	Active TSS	Primary monocytes fromperipheralblood	blood
15	chr5:180229200-180231000	Active TSS	Primary T cells from cord blood	blood
16	chr5:180229200-180231000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:180229200-180231000	Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr5:180229200-180231000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:180229200-180231000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr5:180229200-180231200	Active TSS	Thymus	Thymus
21	chr5:180229400-180230800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:180229400-180230800	Transcr. at gene 5' and 3'	Right Atrium	heart
23	chr5:180229400-180232200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr5:180229400-180232200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:180229600-180230800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
26	chr5:180229600-180233600	Enhancers	Fetal Brain Male	brain
27	chr5:180230000-180230800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:180230000-180230800	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr5:180230000-180230800	Flanking Active TSS	Fetal Stomach	stomach
30	chr5:180230000-180230800	Flanking Active TSS	Pancreas	Pancrea
31	chr5:180230000-180230800	Flanking Active TSS	Right Ventricle	heart
32	chr5:180230000-180231000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr5:180230000-180231000	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr5:180230000-180231200	Flanking Active TSS	Fetal Muscle Leg	muscle
35	chr5:180230000-180231200	Flanking Active TSS	Placenta	Placenta
36	chr5:180230000-180231200	Flanking Active TSS	HSMM	muscle
37	chr5:180230000-180231400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:180230000-180231400	Flanking Active TSS	HMEC	breast
39	chr5:180230000-180231600	Flanking Active TSS	Colonic Mucosa	Colon
40	chr5:180230000-180231600	Enhancers	Fetal Heart	heart
41	chr5:180230000-180231600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr5:180230000-180231600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr5:180230000-180231800	Flanking Active TSS	Liver	Liver
44	chr5:180230000-180232000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr5:180230000-180232000	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr5:180230000-180232200	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr5:180230000-180232400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:180230000-180232400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:180230000-180232400	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr5:180230200-180230800	Flanking Active TSS	Brain Cingulate Gyrus	brain

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