Variant report

Variant	rs263189
Chromosome Location	chr6:142859724-142859725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142795293..142796599-chr6:142858404..142859884,17	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1040525	0.85[EUR][1000 genomes]
rs1040526	0.88[EUR][1000 genomes]
rs1360194	0.89[EUR][1000 genomes]
rs1418201	0.81[EUR][1000 genomes]
rs155259	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1891308	0.81[EUR][1000 genomes]
rs2039986	0.81[EUR][1000 genomes]
rs2050157	0.81[EUR][1000 genomes]
rs2294764	0.89[EUR][1000 genomes]
rs2294771	0.89[EUR][1000 genomes]
rs262115	0.88[EUR][1000 genomes]
rs262119	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs262121	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs262129	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs263178	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs263179	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs263180	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263182	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263183	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263184	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263185	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs263186	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263187	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263188	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748069	0.89[EUR][1000 genomes]
rs3817929	0.89[EUR][1000 genomes]
rs611802	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570507	0.85[EUR][1000 genomes]
rs6570508	0.81[EUR][1000 genomes]
rs6570509	0.87[EUR][1000 genomes]
rs6570510	0.89[EUR][1000 genomes]
rs6909857	0.86[EUR][1000 genomes]
rs6929442	0.89[EUR][1000 genomes]
rs6937121	0.86[EUR][1000 genomes]
rs7741741	0.81[EUR][1000 genomes]
rs7754638	0.89[EUR][1000 genomes]
rs7755109	0.89[EUR][1000 genomes]
rs7763064	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7770386	0.88[EUR][1000 genomes]
rs7774095	0.82[EUR][1000 genomes]
rs7776375	0.88[EUR][1000 genomes]
rs9373346	0.89[EUR][1000 genomes]
rs9389985	0.81[EUR][1000 genomes]
rs9389986	0.82[EUR][1000 genomes]
rs9389987	0.81[EUR][1000 genomes]
rs9403380	0.81[EUR][1000 genomes]
rs9403382	0.84[EUR][1000 genomes]
rs9403383	0.86[EUR][1000 genomes]
rs9403387	0.89[EUR][1000 genomes]
rs9496346	0.82[EUR][1000 genomes]
rs9496369	0.86[EUR][1000 genomes]
rs9496374	0.88[EUR][1000 genomes]
rs9496392	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs962554	0.88[EUR][1000 genomes]
rs972982	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142846600-142865600	Weak transcription	Right Atrium	heart
2	chr6:142859200-142859800	Weak transcription	K562	blood

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