Variant report

Variant	rs9496369
Chromosome Location	chr6:142724918-142724919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1040525	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1040526	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1342060	0.88[EUR][1000 genomes]
rs1360194	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418201	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs155259	0.86[EUR][1000 genomes]
rs1891308	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2039986	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039987	0.88[EUR][1000 genomes]
rs2050157	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2294764	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2294771	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262115	0.80[EUR][1000 genomes]
rs262119	0.86[EUR][1000 genomes]
rs262121	0.86[EUR][1000 genomes]
rs262129	0.86[EUR][1000 genomes]
rs263178	0.85[EUR][1000 genomes]
rs263179	0.85[EUR][1000 genomes]
rs263180	0.86[EUR][1000 genomes]
rs263181	0.86[EUR][1000 genomes]
rs263182	0.86[EUR][1000 genomes]
rs263183	0.86[EUR][1000 genomes]
rs263184	0.86[EUR][1000 genomes]
rs263185	0.84[EUR][1000 genomes]
rs263186	0.86[EUR][1000 genomes]
rs263187	0.86[EUR][1000 genomes]
rs263188	0.86[EUR][1000 genomes]
rs263189	0.86[EUR][1000 genomes]
rs3748069	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817929	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896582	0.91[EUR][1000 genomes]
rs611802	0.83[EUR][1000 genomes]
rs6570507	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570508	0.92[EUR][1000 genomes]
rs6570509	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570510	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909857	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929442	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6937121	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7741741	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754638	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755109	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7756305	0.89[EUR][1000 genomes]
rs7763064	0.91[EUR][1000 genomes]
rs7770386	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774095	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776375	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373346	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389984	0.87[EUR][1000 genomes]
rs9389985	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9389986	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389987	0.90[EUR][1000 genomes]
rs9399401	0.88[EUR][1000 genomes]
rs9403380	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403381	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403382	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403383	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403387	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496346	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9496374	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496392	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs962554	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs972982	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142698600-142733200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:142708000-142734800	Weak transcription	Esophagus	oesophagus
3	chr6:142710200-142733400	Weak transcription	HSMM	muscle
4	chr6:142711400-142725000	Strong transcription	HepG2	liver
5	chr6:142711800-142725200	Strong transcription	Liver	Liver
6	chr6:142712200-142735000	Weak transcription	Fetal Brain Male	brain
7	chr6:142714200-142733200	Weak transcription	HMEC	breast
8	chr6:142717600-142725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:142718000-142763200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:142719800-142735400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:142720400-142725000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:142720400-142733200	Weak transcription	NHEK	skin
13	chr6:142720600-142736800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:142721600-142749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:142721800-142725600	Weak transcription	Gastric	stomach
16	chr6:142722000-142728000	Weak transcription	Primary T cells from cord blood	blood
17	chr6:142722000-142743400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:142722200-142728800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:142722200-142731000	Weak transcription	NHLF	lung
20	chr6:142722200-142731600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:142722200-142734200	Weak transcription	Hela-S3	cervix
22	chr6:142722400-142725800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:142722400-142725800	Weak transcription	Fetal Lung	lung
24	chr6:142722400-142726000	Weak transcription	Stomach Mucosa	stomach
25	chr6:142722400-142728000	Weak transcription	Small Intestine	intestine
26	chr6:142722400-142728600	Weak transcription	HSMMtube	muscle
27	chr6:142722600-142725800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:142723000-142725800	Weak transcription	Fetal Intestine Large	intestine
29	chr6:142723200-142725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:142723400-142725800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:142723600-142725200	Strong transcription	A549	lung
32	chr6:142723800-142725800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:142723800-142725800	Strong transcription	HUVEC	blood vessel
34	chr6:142724000-142729400	Weak transcription	Placenta	Placenta
35	chr6:142724600-142725400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:142724600-142726800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:142724600-142731400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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