Variant report

Variant	rs262115
Chromosome Location	chr6:142817407-142817408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142815726..142818546-chr6:142820153..142822884,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1040526	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs11755163	1.00[YRI][hapmap]
rs1360194	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs1418201	0.90[CEU][hapmap]
rs155259	0.88[EUR][1000 genomes]
rs2039986	0.90[CEU][hapmap]
rs2039987	0.84[CEU][hapmap]
rs2294764	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2294771	0.82[EUR][1000 genomes]
rs262119	0.88[EUR][1000 genomes]
rs262121	0.88[EUR][1000 genomes]
rs262129	0.88[EUR][1000 genomes]
rs263178	0.87[EUR][1000 genomes]
rs263179	0.87[EUR][1000 genomes]
rs263180	0.88[EUR][1000 genomes]
rs263181	0.88[EUR][1000 genomes]
rs263182	0.88[EUR][1000 genomes]
rs263183	0.88[EUR][1000 genomes]
rs263184	0.88[EUR][1000 genomes]
rs263185	0.86[EUR][1000 genomes]
rs263186	0.88[EUR][1000 genomes]
rs263187	0.88[EUR][1000 genomes]
rs263188	0.88[EUR][1000 genomes]
rs263189	0.88[EUR][1000 genomes]
rs3748069	0.82[EUR][1000 genomes]
rs3817929	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4896582	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs611802	0.85[EUR][1000 genomes]
rs6570507	1.00[YRI][hapmap]
rs6570508	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6570509	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6570510	0.83[EUR][1000 genomes]
rs6909857	0.90[CEU][hapmap]
rs6929442	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs6937121	0.90[CEU][hapmap]
rs7741741	0.82[CEU][hapmap]
rs7753012	0.90[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7754638	0.82[EUR][1000 genomes]
rs7755109	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7763064	0.86[EUR][1000 genomes]
rs7770386	0.81[EUR][1000 genomes]
rs7776375	0.81[EUR][1000 genomes]
rs9373346	0.83[EUR][1000 genomes]
rs9389985	0.83[CEU][hapmap]
rs9389986	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs9399401	0.80[CEU][hapmap]
rs9403387	0.82[EUR][1000 genomes]
rs9496346	0.84[CEU][hapmap]
rs9496369	0.80[EUR][1000 genomes]
rs9496374	0.82[EUR][1000 genomes]
rs9496392	0.86[EUR][1000 genomes]
rs962554	0.85[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142817200-142817800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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