Variant report

Variant	rs9496392
Chromosome Location	chr6:142799327-142799328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1040525	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1040526	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1342060	0.84[EUR][1000 genomes]
rs1360194	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1418201	0.87[EUR][1000 genomes]
rs155259	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1891308	0.86[EUR][1000 genomes]
rs2039986	0.87[EUR][1000 genomes]
rs2039987	0.84[EUR][1000 genomes]
rs2050157	0.87[EUR][1000 genomes]
rs2294764	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2294771	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs262115	0.86[EUR][1000 genomes]
rs262119	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs262121	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs262129	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs263178	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs263179	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs263180	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263181	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263182	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263183	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263184	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263185	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs263186	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263187	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs263188	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs263189	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3748069	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817929	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4896582	0.84[EUR][1000 genomes]
rs611802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6570507	0.90[EUR][1000 genomes]
rs6570508	0.85[EUR][1000 genomes]
rs6570509	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570510	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6909857	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6929442	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6937121	0.91[EUR][1000 genomes]
rs7741741	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754638	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7755109	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7756305	0.85[EUR][1000 genomes]
rs7763064	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770386	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774095	0.87[EUR][1000 genomes]
rs7776375	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9373346	0.95[EUR][1000 genomes]
rs9389984	0.83[EUR][1000 genomes]
rs9389985	0.87[EUR][1000 genomes]
rs9389986	0.88[EUR][1000 genomes]
rs9389987	0.86[EUR][1000 genomes]
rs9399401	0.84[EUR][1000 genomes]
rs9403380	0.86[EUR][1000 genomes]
rs9403381	0.85[EUR][1000 genomes]
rs9403382	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403383	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9403387	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9496346	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9496369	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9496374	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs962554	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs972982	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142796000-142806200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:142799000-142799600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:142799000-142799800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:142799200-142799600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:142799200-142799600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:142799200-142799600	Enhancers	A549	lung
7	chr6:142799200-142799800	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links