Variant report

Variant	rs611802
Chromosome Location	chr6:142866387-142866388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142857341..142858848-chr6:142866287..142867796,2	MCF-7	breast:
2	chr6:142865194..142866984-chr6:142867899..142870428,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1040525	0.81[EUR][1000 genomes]
rs1040526	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1360194	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs155259	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2294764	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2294771	0.85[EUR][1000 genomes]
rs262115	0.85[EUR][1000 genomes]
rs262119	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs262121	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs262129	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs263178	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs263179	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs263180	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263181	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263182	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263183	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263184	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263185	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs263186	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263187	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263188	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs263189	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3748069	0.85[EUR][1000 genomes]
rs3817929	0.85[EUR][1000 genomes]
rs6570507	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6570509	0.83[EUR][1000 genomes]
rs6570510	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs6909857	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6929442	0.85[EUR][1000 genomes]
rs6937121	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7754638	0.85[EUR][1000 genomes]
rs7755109	0.85[EUR][1000 genomes]
rs7756305	0.84[CEU][hapmap]
rs7763064	0.90[EUR][1000 genomes]
rs7770386	0.85[EUR][1000 genomes]
rs7776375	0.84[EUR][1000 genomes]
rs9373346	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs9399401	0.84[CEU][hapmap]
rs9403382	0.80[EUR][1000 genomes]
rs9403383	0.83[EUR][1000 genomes]
rs9403387	0.86[EUR][1000 genomes]
rs9496369	0.83[EUR][1000 genomes]
rs9496374	0.85[EUR][1000 genomes]
rs9496392	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs962554	0.84[EUR][1000 genomes]
rs972982	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142864400-142869400	Weak transcription	HMEC	breast
2	chr6:142864400-142871800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:142864400-142872000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:142864400-142872200	Weak transcription	NHEK	skin
7	chr6:142864800-142866800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:142864800-142867000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:142864800-142867400	Enhancers	Dnd41	blood
10	chr6:142865000-142866800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:142865000-142867000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:142865000-142867000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:142865000-142867200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:142865200-142866800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr6:142865800-142866600	Enhancers	Thymus	Thymus
16	chr6:142865800-142867200	Enhancers	Fetal Thymus	thymus
17	chr6:142866200-142867400	Enhancers	Primary T cells from cord blood	blood

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